Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31709
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 32 0.40
11_01_0066 - 536281-537196,537397-537452 31 1.2
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 30 1.6
09_02_0082 - 4060018-4061604 30 2.1
06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149... 29 2.8
12_01_0393 - 3100230-3100714,3100973-3101097,3101271-3101399,310... 29 3.7
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 29 3.7
04_03_0150 + 11877714-11878487,11880928-11881245 29 3.7
11_06_0156 + 20748472-20748951 29 4.9
10_07_0168 + 13758189-13758418,13758888-13759041,13760576-137610... 28 6.5
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 28 6.5
07_03_0310 - 16574364-16574538,16574648-16574865,16574955-165750... 28 6.5
07_01_0045 - 357463-357921 28 6.5
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 6.5
04_03_0284 + 13896307-13896765 28 6.5
03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672 28 6.5
03_06_0148 + 31982976-31984097 28 6.5
02_01_0503 + 3669758-3670059,3670351-3670870 28 6.5
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 28 8.6
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 28 8.6
10_06_0020 - 9693126-9693437,9694940-9695368 28 8.6
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 8.6
08_02_0588 + 19036509-19039235 28 8.6
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 32.3 bits (70), Expect = 0.40
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -1
Query: 291 ERVLVSKEAPQMEVLPFVSAITSPARWG*APALAAEPPTILV 166
E + AP LPF S + + AR G APAL+A P LV
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +3
Query: 552 PASEGPPMLLREPTTNKNAK*ASRSLPTPSAPARLETM*SLPPPSVLTALTVAAP 716
PAS PP + P + + S + P P +P T S PP + TA TV P
Sbjct: 212 PASPPPPSIATPPPSPASPPPPSTATPPPPSPTPTTTRASPTPPPIPTA-TVRPP 265
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 30.3 bits (65), Expect = 1.6
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Frame = +2
Query: 149 AADFDGTRIVGGSAANAGA-HPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRR 325
AAD GT G+ NA A + A V+ + +GR S+ +L + + AA WR+RR
Sbjct: 33 AADAAGTGT--GTGRNAVAVNGGAAEDVVVIASGRRSVGEPTLDVSEMLLQAAETWRSRR 90
Query: 326 AQARQFTLALGTANIFS---GGTRVTTSNVQMHGSYNM 430
Q AL + + GG+ TS + G M
Sbjct: 91 TQREARPDALPPRPVAADGRGGSGEGTSRARGRGEEGM 128
>09_02_0082 - 4060018-4061604
Length = 528
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 537 LGPGLPASEGPPMLLREPTTNKNA-K*ASRSLPTPSAPARLETM*SLPPPSVLTALTVAA 713
L +P + P+ LR P + + + +P P APA S+P P+V AA
Sbjct: 388 LSSAMPRATTAPLALRGPAPHLRVPRMLAPPIPMPPAPAPPVPTPSMPSPTVPAPPVTAA 447
Query: 714 PA 719
PA
Sbjct: 448 PA 449
>06_01_0193 -
1491710-1491739,1492194-1492319,1492631-1492766,
1493048-1493112,1493213-1493305,1493433-1493498,
1493763-1493843,1493977-1494032,1494692-1494780,
1495340-1495425,1495531-1495647,1496109-1496254,
1496665-1496725,1496831-1496914,1497028-1497135,
1497286-1497388,1497802-1497845,1498100-1498584,
1499417-1499603,1500150-1500362,1501066-1501323
Length = 877
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 272 RKLRRWKFCHSSVRSQVQQDGGEHQRWRQNHPQSWY--RRSQRLPRRVKTLGPG 117
R+ R W+ + R++V G + WR+ ++ RRS+R RR KT G G
Sbjct: 310 RRRRPWRRGGARGRAEVVVAGKRRRSWRRRRSRTRQRRRRSRRRRRRRKTCGGG 363
>12_01_0393 -
3100230-3100714,3100973-3101097,3101271-3101399,
3102480-3102508
Length = 255
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 98 PHQDRYPPGRES*RAEEAADFDGTRIVGGSAANAGAHPHLA 220
P+ D P E+ ++AAD + +GGS A+ HP +A
Sbjct: 147 PNMDTEPQDPEAAEMQDAADRNMAPPIGGSNASRANHPSMA 187
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 409 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 317
+++ G D S SC S+G ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199
>04_03_0150 + 11877714-11878487,11880928-11881245
Length = 363
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -3
Query: 715 GAATVRAVNTEGGGNDHIVSKRA----GADGVGNDLE 617
G T+ V ++GGG +V R GADG+G+D +
Sbjct: 289 GRGTIGGVASDGGGQGVVVLTRGSLEGGADGIGDDFD 325
>11_06_0156 + 20748472-20748951
Length = 159
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 593 CWLPKQHRRSFRSRQPRPKY 534
CWLP+ RRS R R R K+
Sbjct: 6 CWLPRACRRSMRHRSCRTKF 25
>10_07_0168 +
13758189-13758418,13758888-13759041,13760576-13761042,
13761361-13761478,13761566-13761622,13761906-13762082,
13762225-13762365,13762458-13762531,13764583-13764738,
13764822-13764895,13764992-13765068
Length = 574
Score = 28.3 bits (60), Expect = 6.5
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = +2
Query: 227 VIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNV 406
VIA T + + S +NT S A C RR+ +A G A I G+ + S+
Sbjct: 160 VIAATYVDSMLGARSSTSNTESTAAVSCVPARRSMIE--IMAFGVAKILVRGSNMMKSDG 217
Query: 407 QMHGSYNMDTLHNDVA 454
G + L +VA
Sbjct: 218 AASGERKIGILAFEVA 233
>09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 40 QY*WRW-RPWSWQKSPSNSTTTSRSVSPGPRVLTRRGSR 153
Q+ W+W +PW + +S T P P++L R R
Sbjct: 1005 QFKWKWQKPWKLSEMIRHSDETMTRTRPRPQLLPHRPQR 1043
>07_03_0310 -
16574364-16574538,16574648-16574865,16574955-16575019,
16575101-16575191,16575407-16575613,16576805-16577041
Length = 330
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 121 GPRVLTRRGSR*LRRYQDCGWFCRQRWCSPPSC 219
GP V+ + +R + YQD GW C + P C
Sbjct: 73 GPLVIKKDITRSRKEYQDVGWRCLLNGQNEPRC 105
>07_01_0045 - 357463-357921
Length = 152
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 272 RKLRRWKFCHSSVRSQVQQDGGEHQRWRQNHPQSWY--RRSQRLPRRVKTLGPG 117
R+ R W+ + R++V G + WR+ ++ RRS+R RR +T G G
Sbjct: 52 RRRRPWRRGGARGRAEVVVAGKRRRSWRRRRSRTRQRRRRSRRRRRRRRTCGGG 105
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 260 RWKFCHSSVRSQVQQDGGEHQRWRQNHPQSW 168
R + HS GG HQR R +HP +W
Sbjct: 543 RHRHGHSHGDHHHHYHGGHHQRRRHHHPPAW 573
>04_03_0284 + 13896307-13896765
Length = 152
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 272 RKLRRWKFCHSSVRSQVQQDGGEHQRWRQNHPQSWY--RRSQRLPRRVKTLGPG 117
R+ R W+ + R++V G + WR+ ++ RRS+R RR +T G G
Sbjct: 52 RRRRPWRRGGARGRAEVVVAGKRRRSWRRRRSRTRQRRRRSRRRRRRRRTCGGG 105
>03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672
Length = 242
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 272 RKLRRWKFCHSSVRSQVQQDGGEHQRWRQNHPQSWY--RRSQRLPRRVKTLGPG 117
R+ R W+ + R++V G + WR+ ++ RRS+R RR +T G G
Sbjct: 142 RRRRPWRRGGARGRAEVVVAGKRRRSWRRRRSRTRQRRRRSRRRRRRRRTCGGG 195
>03_06_0148 + 31982976-31984097
Length = 373
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 80 AHRTRLPHQDRYPPGRES*RAEEAADFDGTRIVGGSAANAG 202
AH R+ + PGR RA+ D G RI+GG N G
Sbjct: 271 AHARRVAGRHGVEPGRGGARADLGVDVGG-RIIGGGDDNGG 310
>02_01_0503 + 3669758-3670059,3670351-3670870
Length = 273
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Frame = +1
Query: 28 RSSQQY*WRWRPWS------WQKSPSNSTTTSRSVSPGPRVLTRRG 147
RS Q+ W W PW W P + VSP R RRG
Sbjct: 99 RSGQR--WNWSPWHVIQRPWWSPLPGQGIRWWQQVSPSRRAADRRG 142
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 260 CGASLLTNTRSVTAAHC 310
CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291
>11_06_0151 - 20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 203 HQRWRQNHPQSWYRRSQRLPRRVKTLGPGD 114
H++ + Q W R++ +P K LGP D
Sbjct: 970 HEKIENINDQYWTLRAEEIPEEEKNLGPND 999
>10_06_0020 - 9693126-9693437,9694940-9695368
Length = 246
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 136 TRRGSR*L--RRYQDCGWFCRQRWCS 207
TR G+R RR + C W+ Q+WCS
Sbjct: 104 TRGGARGSWRRRRRSCSWWSSQQWCS 129
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 339 SSPSLLAQLTSSPEAPGSPPP 401
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>08_02_0588 + 19036509-19039235
Length = 908
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 227 VIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQ 331
V+ + +GR S+ +L + + AA WR+RR Q
Sbjct: 185 VVVIVSGRRSVGEPTLDVSEMLLQAAQAWRSRRTQ 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,914,435
Number of Sequences: 37544
Number of extensions: 416743
Number of successful extensions: 2049
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2046
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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