Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31709
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    50   2e-06
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    42   3e-04
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    38   0.005
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    38   0.010
Z93394-6|CAB61034.1|  766|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL117203-24|CAB61043.1|  766|Caenorhabditis elegans Hypothetical...    29   2.5  
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    29   3.3  
X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    29   4.4  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    29   4.4  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    29   4.4  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 31/97 (31%), Positives = 50/97 (51%)
 Frame = +2

Query: 170 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 349
           RI+GG++ + GA+  +A LV    NG+  +CGA+++ +   VTAAHC    + Q R F  
Sbjct: 37  RIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVY 93

Query: 350 ALGTANIFSGGTRVTTSNVQMHGSYNMDTLHNDVAII 460
                N  +     +     +H  YN  T  ND+A++
Sbjct: 94  VREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALL 128


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
 Frame = +2

Query: 140 AEEAADFDGTRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-R 316
           A +AA     R+VGG     GA P  A L    T      CGAS+L  T  +TAAHC+  
Sbjct: 16  ARDAAKSRIARVVGGFETVPGAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCFEE 73

Query: 317 TRRAQARQFTLALGTANIFSGGTRV-TTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNN 490
             R  + +  +     N   G  ++     +  +  Y  D   +D+AI+   + G   N
Sbjct: 74  DERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFN 131


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
 Frame = +2

Query: 140 AEEAADFDGT--RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW 313
           A+E AD+     R++GGS ++  + P    L+  L + R   CG SL+     +TAAHC+
Sbjct: 45  AQEPADYVTLDHRLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTAAHCF 101

Query: 314 RTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGSYNM 430
              R +   +++ +G     SG     T+ V +H  YN+
Sbjct: 102 AKDR-RPTSYSVRVGGHRSGSGSPHRVTA-VSIHPWYNI 138


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +2

Query: 167 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 310
           T I+ G +AN+     LA ++    +G T++CG  L+  +  +T+AHC
Sbjct: 15  TSIINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62


>Z93394-6|CAB61034.1|  766|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1b protein.
          Length = 766

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 157 LRRYQDCGWFCRQRWCSPPSCWTCDRTDEWQNFHLRSF 270
           ++R  DC W C +R  SPPS +    +D   +  LR F
Sbjct: 100 VKRVGDCMWIC-ERAASPPSSFDSSSSDSDDDSFLRIF 136


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 394 GDPGASGEDVSCAKSEGELTSLGSPGPP 311
           G+PGA G+D    K +GE    G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226


>AL117203-24|CAB61043.1|  766|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1b protein.
          Length = 766

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 157 LRRYQDCGWFCRQRWCSPPSCWTCDRTDEWQNFHLRSF 270
           ++R  DC W C +R  SPPS +    +D   +  LR F
Sbjct: 100 VKRVGDCMWIC-ERAASPPSSFDSSSSDSDDDSFLRIF 136


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +2

Query: 185 SAANAGAHPHLAGLVIAL-TNGRTS----ICGASLLTNTRSVTAAHCWR 316
           +A N G   HLA   + +    R      ICG +L+T    +TAAHC++
Sbjct: 32  AAGNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80


>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 440 HNDVAIINHNHVGFTNNIQRINLASGSNN 526
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform a protein.
          Length = 1128

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 440 HNDVAIINHNHVGFTNNIQRINLASGSNN 526
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform b protein.
          Length = 1248

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 440 HNDVAIINHNHVGFTNNIQRINLASGSNN 526
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +1

Query: 475 WLHQQHPAHQPSQWKQQLCWYLGLGCRLRKDLRCCFGSQQP-TKTPSEPPGHYQRRL-RP 648
           +L +Q PAHQ  Q K+Q C      C      +C   ++ P      E    + R++ R 
Sbjct: 530 FLEEQEPAHQKEQNKEQDCPINSKSCEKCSHSKCEKCAKHPHHHCKCEDQKEFNRKIVRA 589

Query: 649 HVWKQCDHC--LHP 684
              K CD C   HP
Sbjct: 590 LCPKTCDICNETHP 603


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 394 GDPGASGEDVSCAKSEGELTSLGSPGPP 311
           G+PGA G+    A S GE    G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 394 GDPGASGEDVSCAKSEGELTSLGSPGPP 311
           G+PGA G+    A S GE    G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,151,108
Number of Sequences: 27780
Number of extensions: 301376
Number of successful extensions: 1341
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)