Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31703
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.0  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    27   2.0  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   2.7  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   3.5  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   6.2  

>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/35 (37%), Positives = 25/35 (71%)
 Frame = +3

Query: 219 ETYSIRCKSI*PSFLKIQILHQIF*YTVIINCTKY 323
           +T+  + KS+  ++L+I+ +HQ+F YTVI N  ++
Sbjct: 400 DTFIGKEKSL-ETYLQIKKMHQLFPYTVIKNIMRF 433


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 221 NIFNSL*KYLT*LPQNPNITSDLLIYSNNKLYKIFAVNGLVRCVL 355
           ++F+ L  Y+T   Q   ++ D  I +N K Y +  + GL+ C+L
Sbjct: 46  SLFHLLEFYITARFQGSQLSWDSFILNNGKAYWLAMLVGLLECLL 90


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 374  LSSDISSMNXILFFDISGSYNKQTSSISIAVRYCRKD--VNISESERPVSRRLGISENL 544
            L  ++ + N +L  DIS SYNKQT+ +   +++  ++  + I E E   S +     NL
Sbjct: 937  LQDELKNRN-LLMDDIS-SYNKQTTKLQEKIKWLERERSILIDELESYRSNQFNYQNNL 993


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 317 KIFAVN-GLVRCVLYLVCRYLSS 382
           K F VN G+ R +L+ +C YLSS
Sbjct: 201 KFFGVNIGIGRAILFNLCSYLSS 223


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 534  LMPRRRDTGRSDSEMFTSLRQYRTAMLIELVCLL*D 427
            L PRR+D+  + S +F+SL         E +CL  D
Sbjct: 1098 LNPRRQDSWYTCSSVFSSLADEELGWSAEQICLADD 1133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,340
Number of Sequences: 5004
Number of extensions: 44437
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)