Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31700
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0079 + 10429217-10429444,10430058-10430303,10430701-104307...    27   6.6  
04_03_0461 - 16165126-16165419,16165947-16166195,16168510-161686...    27   6.6  
12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749           27   8.7  

>10_06_0079 +
           10429217-10429444,10430058-10430303,10430701-10430746,
           10430796-10431000,10432114-10432225
          Length = 278

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 245 NQILNDIFFRVIKERLYNHFCETSLKIKSRYA 340
           +++++D  F+ I +    H CE   KI+ +YA
Sbjct: 179 DEVMDDYLFKSITKESLPHLCELFEKIEQQYA 210


>04_03_0461 -
           16165126-16165419,16165947-16166195,16168510-16168645,
           16171251-16171469,16172738-16173116,16173660-16173918,
           16176052-16176315
          Length = 599

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 437 KFGVDTNNKYREIKARVRIYVFFKVICESEDFVRILTLFLKMF 309
           KF     N +RE +A+V     ++V C  ++F  + T +L+ F
Sbjct: 389 KFYRALQNYFRETEAQVEASDKYRVTCMKKEFQNLSTYYLQEF 431


>12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749
          Length = 587

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 227 IVFSH*NCIISKLTNFTGECFKGLTCDIFNINHLCN 120
           +VF    C++SK   F G+ +       F +N +CN
Sbjct: 98  LVFESNKCVVSKYETFVGKGYDSGGLFRFALNDMCN 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,136,561
Number of Sequences: 37544
Number of extensions: 129717
Number of successful extensions: 211
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)