Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31700
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical pr...    31   0.37 
AC006804-4|ABO16464.1|  369|Caenorhabditis elegans Hypothetical ...    29   2.0  
AC006804-3|AAF60757.2|  388|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical p...    27   6.0  
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    27   6.0  

>Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical
           protein K11E4.4 protein.
          Length = 825

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = -3

Query: 338 RILTLFLKMFHKNDCIDVP*LL*KKCHLKSDYNTTCDIVFSH*NCIISKLTNFTGECFKG 159
           +IL + L +F     +D+  +  ++ +L   Y   CD+VF   +C I +    T  CF G
Sbjct: 59  KILMILLTIFILIFSLDIVYVCTRQIYLAFSYENDCDLVFETASCSIFRRIALT--CFVG 116

Query: 158 LTCDIF 141
           +T   F
Sbjct: 117 VTTTQF 122


>AC006804-4|ABO16464.1|  369|Caenorhabditis elegans Hypothetical
           protein Y53G8B.4b protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -3

Query: 149 DIFNINHLCNIYFLFFTSYII 87
           DIFN + +  IY++FFT+++I
Sbjct: 260 DIFNTSMVTPIYYVFFTTFVI 280


>AC006804-3|AAF60757.2|  388|Caenorhabditis elegans Hypothetical
           protein Y53G8B.4 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -3

Query: 149 DIFNINHLCNIYFLFFTSYII 87
           DIFN + +  IY++FFT+++I
Sbjct: 279 DIFNTSMVTPIYYVFFTTFVI 299


>Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.16 protein.
          Length = 279

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 263 IFFRVIKERLYNHFCETSLKI 325
           +FF VI   LY+HF  TS+K+
Sbjct: 219 LFFNVIPIILYSHFSPTSVKV 239


>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
           transmembrane conductanceregulator homolog protein 1
           protein.
          Length = 1247

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 327 SQDTHKIFTFTNHFKKNIDSHSGFYLSIF--IIGINS 431
           S +T K+F++  HF K + S  G  LS+F   + INS
Sbjct: 274 SMETIKMFSWEPHFWKKLKSMRGKELSVFRKTLSINS 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,250,028
Number of Sequences: 27780
Number of extensions: 151469
Number of successful extensions: 334
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)