Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31700
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   0.84 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   3.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   4.5  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   5.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 296 NHFCETSLKIKSRYAQNLHFHKSL*KKHRFSLG-LLSLYIYYW 421
           NH   T     S + + L FH +  +K   +LG ++S +I  W
Sbjct: 343 NHLNSTCSVTNSPHQKKLRFHLAKERKASTTLGIIMSAFIVCW 385


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 333 DTHKIFTFTNHFKKNIDSHSG 395
           + HK FT  +H K ++  H+G
Sbjct: 14  ECHKRFTRDHHLKTHMRLHTG 34


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 218 RRRCHTLCCNQILNDIFFRVIKER 289
           R + +  CC++   DIFF +   R
Sbjct: 210 RHKKYYPCCDEPYPDIFFNITLRR 233


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 308 ETSLKIKSRYAQNLHFHKSL*KKHRFSLGLLSLYIYYWYQ 427
           E   ++K  +A+N +  +   ++    LGL    I  W+Q
Sbjct: 30  EQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQ 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,830
Number of Sequences: 438
Number of extensions: 1500
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)