Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31694
(382 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 127 1e-29
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 127 1e-29
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 127 1e-29
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 127 1e-29
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 127 1e-29
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 127 1e-29
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 69 5e-12
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 69 5e-12
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 69 5e-12
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 69 5e-12
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 38 0.011
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 38 0.011
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 38 0.011
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 38 0.011
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 38 0.011
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 38 0.011
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 38 0.011
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 38 0.011
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 38 0.011
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 36 0.044
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 36 0.044
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 36 0.044
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 36 0.044
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 36 0.044
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 36 0.044
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 36 0.044
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 36 0.044
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 36 0.058
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 28 8.7
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 127 bits (306), Expect = 1e-29
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = +3
Query: 93 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 272
+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+LGEVLI
Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLI 64
Query: 273 RCNNVLYVRGAD 308
RCNNVLY+RG +
Sbjct: 65 RCNNVLYIRGVE 76
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 127 bits (306), Expect = 1e-29
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = +3
Query: 93 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 272
+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+LGEVLI
Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLI 64
Query: 273 RCNNVLYVRGAD 308
RCNNVLY+RG +
Sbjct: 65 RCNNVLYIRGVE 76
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 127 bits (306), Expect = 1e-29
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = +3
Query: 93 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 272
+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+LGEVLI
Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLI 64
Query: 273 RCNNVLYVRGAD 308
RCNNVLY+RG +
Sbjct: 65 RCNNVLYIRGVE 76
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 127 bits (306), Expect = 1e-29
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = +3
Query: 93 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 272
+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+LGEVLI
Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLI 64
Query: 273 RCNNVLYVRGAD 308
RCNNVLY+RG +
Sbjct: 65 RCNNVLYIRGVE 76
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 127 bits (306), Expect = 1e-29
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = +3
Query: 93 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 272
+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+LGEVLI
Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLI 64
Query: 273 RCNNVLYVRGAD 308
RCNNVLY+RG +
Sbjct: 65 RCNNVLYIRGVE 76
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 127 bits (306), Expect = 1e-29
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = +3
Query: 93 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 272
+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+LGEVLI
Sbjct: 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLI 64
Query: 273 RCNNVLYVRGAD 308
RCNNVLY+RG +
Sbjct: 65 RCNNVLYIRGVE 76
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 68.9 bits (161), Expect = 5e-12
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = +3
Query: 99 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 278
P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 279 NNVLYV 296
NNVLY+
Sbjct: 68 NNVLYI 73
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 68.9 bits (161), Expect = 5e-12
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = +3
Query: 99 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 278
P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 279 NNVLYV 296
NNVLY+
Sbjct: 68 NNVLYI 73
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 68.9 bits (161), Expect = 5e-12
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = +3
Query: 99 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 278
P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 279 NNVLYV 296
NNVLY+
Sbjct: 68 NNVLYI 73
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 68.9 bits (161), Expect = 5e-12
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = +3
Query: 99 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 278
P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 279 NNVLYV 296
NNVLY+
Sbjct: 68 NNVLYI 73
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 105 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 284
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 285 VLYVRGAD 308
++ + +
Sbjct: 67 IIMLEALE 74
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 105 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 284
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 285 VLYVRGAD 308
++ + +
Sbjct: 67 IIMLEALE 74
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 105 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 284
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 285 VLYVRGAD 308
++ + +
Sbjct: 67 IIMLEALE 74
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 105 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 284
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 285 VLYVRGAD 308
++ + +
Sbjct: 67 IIMLEALE 74
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 105 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 284
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 285 VLYVRGAD 308
++ + +
Sbjct: 67 IIMLEALE 74
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 105 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 284
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 285 VLYVRGAD 308
++ + +
Sbjct: 67 IIMLEALE 74
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 105 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 284
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 285 VLYVRGAD 308
++ + +
Sbjct: 67 IIMLEALE 74
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 105 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 284
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 285 VLYVRGAD 308
++ + +
Sbjct: 67 IIMLEALE 74
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 105 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 284
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 285 VLYVRGAD 308
++ + +
Sbjct: 67 IIMLEALE 74
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.044
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 99 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 275
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 276 CNNVLYVRGAD 308
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.044
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 99 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 275
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 276 CNNVLYVRGAD 308
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.044
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 99 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 275
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 276 CNNVLYVRGAD 308
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.044
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 99 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 275
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 276 CNNVLYVRGAD 308
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.044
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 99 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 275
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 276 CNNVLYVRGAD 308
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.044
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 99 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 275
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 276 CNNVLYVRGAD 308
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.044
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 99 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 275
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 276 CNNVLYVRGAD 308
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.044
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 99 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 275
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 276 CNNVLYVRGAD 308
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 35.5 bits (78), Expect = 0.058
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 129 KSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNVLYVRGAD 308
K + +KL G +G+L D +MNL + E+ N+G V+IR N+++ + +
Sbjct: 3 KKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALE 62
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 162 EYKGLLVSTDGYMNLQLANTEELVDGT-CTGNLGEVLIRCNNV 287
+ +G ++ D YMNL L + EE+ T LG ++++ +N+
Sbjct: 42 QIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNI 84
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,322,507
Number of Sequences: 237096
Number of extensions: 746013
Number of successful extensions: 1170
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2526356360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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