Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31694
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.5  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   6.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   8.5  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    20   8.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 98  IYWHSSRHFCRFLI 57
           +Y+H  RH   FLI
Sbjct: 205 VYFHLQRHMGNFLI 218


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 131 FTR*TIKKWFGIYWHSSRHFCRFLISANK 45
           FT  ++KK FG Y+       + LI  NK
Sbjct: 5   FTLQSLKKDFGTYFQQYCLHHKILIKKNK 33


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/38 (21%), Positives = 16/38 (42%)
 Frame = -1

Query: 364 LTYVIITNYXXXXXXXXXXSAPLTYKTLLHLIKTSPKL 251
           L  + + N+           +PLT   + H++  SP +
Sbjct: 30  LELINLENFFPEENVVEELLSPLTLNRITHILANSPAI 67


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 207 QLANTEELVDGTCTG 251
           ++A TEELVDG   G
Sbjct: 43  KIAITEELVDGMRRG 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,100
Number of Sequences: 438
Number of extensions: 1732
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)