Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31684
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    28   0.94 
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   1.6  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   3.8  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    25   6.7  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -1

Query: 152 LYLS*NLDVSVLWLVFFLSDLICSXNFSKNI*VKINPSLRILK 24
           + LS N   S  WL+    D+I + + SKN  +K+ P+++ LK
Sbjct: 593 MVLSKNPCFSSEWLIKCFEDMIANESASKNEIMKLVPNIQALK 635


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 429 TSAMPGAEPSRCLPXNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRG 289
           TS++P    S     NTL  P L  + S    +TV  + FH+  + G
Sbjct: 740 TSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHASTVSRNPFHNLKISG 786


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 31  ILKEGFILTHIFLEKFXLHIRSDKKNTSHRTDT 129
           ILK  ++     L+K  +H R   KN S RTDT
Sbjct: 374 ILKGMYLQKRGDLKKAEVHYRETAKNFSFRTDT 406


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 33  SQGRIYFDSYIFGEIXAAYQIR*EEHKPQ 119
           S G   FD+ IF EI  AY+ R EE + Q
Sbjct: 182 SCGIYIFDASIFDEIKKAYERRLEEVEKQ 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,018
Number of Sequences: 5004
Number of extensions: 41510
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)