Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31683
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 54 1e-08
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 30 0.28
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 28 0.86
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 28 0.86
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po... 27 2.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 2.6
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.1
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 8.0
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.0
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 54.4 bits (125), Expect = 1e-08
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 6 GVSMKWTAGS-ADTL-FGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAA 179
G ++ W A S A+ + + +KYALD+D + KIN+ + L Y Q +RPGVT+ L
Sbjct: 202 GGNVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLGLQ 261
Query: 180 IDGQNFNAGGHKVGVAL 230
+D Q HK G++L
Sbjct: 262 LDTQRLGQPAHKAGLSL 278
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 29.9 bits (64), Expect = 0.28
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 22 GRRVRPTHYSELERSTRWTKTRLCTPRSTTSP 117
G V+PT SE+++ T W K L P ST+SP
Sbjct: 45 GLLVKPTMLSEVQKPTLWEK--LTKPASTSSP 74
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 28.3 bits (60), Expect = 0.86
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +2
Query: 128 WLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCPRTRALENITKPTLVDKYILLSQPNS 304
W T PR C + T+++ + PQ P T L K +D + L PNS
Sbjct: 145 WEGNLTNPRSEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKCKHIDLDTFSRLDHPNS 203
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 28.3 bits (60), Expect = 0.86
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -3
Query: 531 YHSINYISHHRCLXTRFIN*KSSEXI-FXRELFTNI*EKLMK*SHSILRKAGKEYCVLNA 355
YH+ + + HH T + N S I F ++ +N+ K ++ + K G E +
Sbjct: 56 YHTTSVLKHHNVSNTSYCNLSPSLFIKFAEDVLSNL-AKRVEIWGANSAKTGFELLKQAS 114
Query: 354 PGTIHVISTILIDSLY 307
PG + ++ +L+ Y
Sbjct: 115 PGNMQMLEDLLVSENY 130
>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 167
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 476 IKSRVXLYFXANCLQTFRKS**NSLTAFLG-KQERNI 369
+K + LYF A+CL TF S T ++ K+ER+I
Sbjct: 66 LKYLLPLYFLASCLLTFWSSVVKGSTVYVATKKERHI 102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 2.6
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1
Query: 94 TPRSTTSPSSVLVT-NRNYAQA*PLHCLLPSMDRTSMQVA-TRLALPSNSSPRKYNQTY 264
+PR+T +PS+ + N N + + + T + +A ++ +LPSNS+P K N ++
Sbjct: 263 SPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPNTSF 321
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 574 FFFFLLIKTDYSFLLSFNQLYITPQVLI 491
FFFFLL +SF SF+ L+ Q+ I
Sbjct: 119 FFFFLLFFLSFSF--SFSFLFFLSQIFI 144
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 8.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 50 RSWSEVRAGPRRVSARQDQQQVPHR 124
R WSE+ G ++ +D+ +VP +
Sbjct: 534 RKWSEINDGLQQKKEEEDEDEVPSK 558
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 8.0
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 11 QHEVDGGFGRHIIRSWSEVRAGPRRVS--ARQDQQQVPHRSWL 133
QH VD I WS ++ RRV+ Q+QQ +P S L
Sbjct: 93 QHRVDDKKILKTIEKWSCIKEKLRRVANITEQEQQCIPAESSL 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,261
Number of Sequences: 5004
Number of extensions: 47255
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -