Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31680
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   3.8  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   3.8  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   3.8  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    24   8.7  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -1

Query: 216 FTLTTL*VCI*FDLFETIFFIRELYRYPLVTPLFCFRY 103
           F++ +L  C+ F  F+T++ + +L +  +   L+CF Y
Sbjct: 48  FSMNSLKFCVLFS-FKTVYSLLKLIKTLIRKLLYCFHY 84


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 60  NDNPCIAMTTNNSDDTENRTMV*LTGIDKV 149
           NDN  I ++ + SDD   RT   L   DKV
Sbjct: 182 NDNAVIVVSDSESDDNNVRTKSSLNDHDKV 211


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = -2

Query: 311 IXXGQHFQNKTIP------ITNVDGIIYFL*PTPKQNRL 213
           I  G HF +KT+P      +T+V G +  L   P  NR+
Sbjct: 302 IKFGSHFPSKTVPLALVIRLTHVSGKVRLLIKPPPSNRV 340


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -3

Query: 400 LNERLLIDXMRASGIREKRGESTLLSGIKKXFXANIFRTKQ-FPSLM*TE*FIFYNQHQN 224
           + E  +++    +GI   + +  LLSG+K  F    ++TK  +  +  T+ F+  +   +
Sbjct: 63  VKEGFMVNFATLTGI-VAQADQRLLSGVKSWFIGATYKTKDIYERMSTTKEFLSPSNMSD 121

Query: 223 RTVYFNNTISMYL 185
            +  F N   +Y+
Sbjct: 122 MSFTFENFDLVYV 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,588,391
Number of Sequences: 5004
Number of extensions: 29525
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)