Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31680
         (429 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.3  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   5.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   7.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 249  NYSVYISDGNCFVLKMLAXXNFFMPDK 329
            NY   ISDG    + + +  NF+MP +
Sbjct: 937  NYLREISDGEPLYVFVRSAPNFYMPSE 963


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -3

Query: 247 IFYNQHQNRTVYFNNTISMYLIRFI*DDIFYSRTLSI 137
           ++YN   +  +Y+ NT S+       +D+ Y R   +
Sbjct: 264 LYYNSPSSENLYYVNTESLMKSENQGNDVQYERVQDV 300


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 226 NRTVYFNNTISMYLIRFI*DDIFYSRTLSIPVSYTI 119
           N+T++ NN  + Y  + +  +I Y   + +PV   I
Sbjct: 309 NKTIHNNNNYNNYNNKKLYYNINYIEQIPVPVPVPI 344


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 315 FMPDKRVDSPRFSRMPEA 368
           ++P  R   PR  R PEA
Sbjct: 105 YIPQPRPPHPRLRREPEA 122



 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 315 FMPDKRVDSPRFSRMPEA 368
           ++P  R   PR  R PEA
Sbjct: 131 YIPQPRPPHPRLRREPEA 148


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 309 NFFMPDKRVDSPRFSRMPEALMXSIRR 389
           NFF+ +   +SP+ +  P   M  I +
Sbjct: 79  NFFLKNDESESPKLNPYPNWEMNDINK 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,981
Number of Sequences: 438
Number of extensions: 2904
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)