Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31667
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    30   0.28 
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.1  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   5.9  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   5.9  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 481 NSIVREYHNEICDKNGNFSNRED 549
           N+IV EY N+I DKNG     ED
Sbjct: 511 NNIVAEYRNDISDKNGIKEEEED 533


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 481 NSIVREYHNEICDKNGNFSNREDMLIFENKFKL 579
           NS++ EY NE+     +FS++   L  EN+ K+
Sbjct: 290 NSLIMEYKNELQSAEEHFSHKIKELTSENELKI 322


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 493 REYHNEICDKNGNFSNREDMLIFENKFKLIL*QLP 597
           ++ H  +CD NG        ++ +NK+ L++ +LP
Sbjct: 264 QKMHYIVCDTNGYLFGVYSSILGKNKWSLVMERLP 298


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 431 VFDILLCENILPHIRLSD 378
           VF   LCENI+PH R  D
Sbjct: 603 VFLPCLCENIIPHSRSDD 620


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = +1

Query: 520 KNGNFSNREDMLIFENKFKLIL*QLPR 600
           KNG FSNRE M   EN F      LPR
Sbjct: 89  KNGGFSNRESM--SENCFSKSSTNLPR 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,922
Number of Sequences: 5004
Number of extensions: 42460
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)