Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31667
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.68 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.68 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.90 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   8.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.4  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 290 FGISFFFYMKSVFLKACLFTIILK*SIWLNLKGV 391
           F   F +Y+  +++  C+  I+   S WL+   V
Sbjct: 237 FKREFSYYLIQIYIPCCMLVIVSWVSFWLDQSAV 270


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 290 FGISFFFYMKSVFLKACLFTIILK*SIWLNLKGV 391
           F   F +Y+  +++  C+  I+   S WL+   V
Sbjct: 237 FKREFSYYLIQIYIPCCMLVIVSWVSFWLDQSAV 270


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 476 HQSCLSCT*VPPQCPVF 426
           H++ LS T  PPQCP F
Sbjct: 555 HRASLSKTPQPPQCPRF 571


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 299 SFFFYMKSVFLKACLFTIILK*SIWLN 379
           S  +Y+  +++ + L  II   S WLN
Sbjct: 219 SMGYYLIQIYIPSGLIVIISWVSFWLN 245


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 299 SFFFYMKSVFLKACLFTIILK*SIWLN 379
           S  +Y+  +++ + L  II   S WLN
Sbjct: 219 SMGYYLIQIYIPSGLIVIISWVSFWLN 245


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 425 DILLCENILPHIRLSDSTR 369
           DI L EN+   + +SDST+
Sbjct: 535 DISLSENLSSGLSISDSTK 553


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 428 KPGTVEELKCNLSSFDETIVSLE 496
           KPG +  L+C+LS+ ++ +  +E
Sbjct: 54  KPGKLVPLQCDLSNQNDILKVIE 76


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 299 SFFFYMKSVFLKACLFTIILK*SIWLN 379
           S  +Y+  +++ + L  II   S WLN
Sbjct: 158 SMGYYLIQIYIPSGLIVIISWVSFWLN 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,684
Number of Sequences: 438
Number of extensions: 3073
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)