Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31665
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1332 - 29403320-29407804                                         29   3.0  
12_02_0496 + 19704429-19704613,19705874-19706736,19706764-197069...    29   4.0  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    27   9.2  

>06_03_1332 - 29403320-29407804
          Length = 1494

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +2

Query: 107 DTECWKSSSRSKYWNSHHFEKKTEVILRLEFDLKKFIRLQCWHY*SVKQSDVTTD 271
           D + W     SK W S   E      L+L +D   F   QC+ Y ++   D   D
Sbjct: 495 DLDDWMRVLESKEWESQTSENDIMPALKLSYDYLSFHLQQCFTYCALFPEDYKFD 549


>12_02_0496 +
           19704429-19704613,19705874-19706736,19706764-19706951,
           19707190-19708200
          Length = 748

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 89  LSVKLSDTECWKSSSRSKYWNSHHFEKKTEVILRLEFD 202
           LS K    + W S   S  WN +  EK+   IL L +D
Sbjct: 308 LSAKEKKHDVWSSILNSMNWNDNEAEKQCLKILALSYD 345


>03_02_0740 - 10836752-10837052,10837756-10837814,10837901-10838476,
            10839965-10841686,10841776-10842173,10842264-10842318,
            10842989-10843048,10843444-10843540,10844885-10844955,
            10845029-10845109,10846054-10846124,10847951-10848119,
            10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 277  RLPVKFSVAIVNILIPTNYY 336
            R PV+FS+ ++ I +  NYY
Sbjct: 1317 RFPVQFSIEVIRIRLENNYY 1336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,465,105
Number of Sequences: 37544
Number of extensions: 226068
Number of successful extensions: 420
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)