Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31659
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   5.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.9  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 559 SSKNFNSCWYSNNYST*SKICSCINI 636
           SS N+N   Y+NNY++     + INI
Sbjct: 305 SSNNYNYKNYNNNYNSKKLYYNIINI 330


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 559 SSKNFNSCWYSNNYST*SKICSCINI 636
           SS N+N   Y+NNY++     + INI
Sbjct: 316 SSNNYNYKNYNNNYNSKKLYYNIINI 341


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 574 NSCWYSNNY 600
           NSC YSNNY
Sbjct: 309 NSCNYSNNY 317


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 501 GFVFLFTVGGLTGVI 457
           G V +  VGGLTG+I
Sbjct: 201 GSVVIHVVGGLTGLI 215


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 65  SHHQLNDIKIYHQQNIHIM 9
           SHH L+  ++ +QQ+ ++M
Sbjct: 72  SHHHLHHHQVLYQQSPYLM 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,293
Number of Sequences: 438
Number of extensions: 2977
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)