Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31650
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    91   2e-19
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    31   0.13 
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    28   0.93 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   4.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.5  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   8.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   8.6  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 60/158 (37%), Positives = 84/158 (53%), Gaps = 1/158 (0%)
 Frame = -2

Query: 513 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTS 334
           ++R +L  GTVCILLAGR  GKRVV++  L    L+VTGP+  N  P+RR+  RYVI TS
Sbjct: 47  KLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATS 105

Query: 333 T-RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTV 157
             +I +    + K F   YF             K+ +  FA    K     +R  DQK V
Sbjct: 106 APKIDVSGVSVEK-FTKAYF----AKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAV 160

Query: 156 DEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLRF 43
           D  ++ AI A P+   ++ YL A+F L +   PH ++F
Sbjct: 161 DAKLLPAIKAIPN---MKEYLAASFALSNGDRPHLMKF 195


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 431 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 565
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = -3

Query: 302 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 165
           +NTS  +T   IRS SN   + K + T LP+ K+N F  S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = -3

Query: 332  PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQST 153
            P F  +TSN  +TS  I S   R+      ++   +TS   K   T  +S+A      S 
Sbjct: 888  PTFKFSTSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTASSYIASSA 947

Query: 152  RL*SKPSEP 126
               +  +EP
Sbjct: 948  SSNTLSTEP 956


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 129  ARPDKKVLRGYLKAAFGLRSSQYPHRLR 46
            A PD++VLR  LKAA  L+    P   R
Sbjct: 1401 ANPDEEVLRAKLKAAERLQKPAIPRTRR 1428


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -3

Query: 281 TSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSA 102
           T+ +  S  +V S      TSL ++ RN+F  ++      +  RL + P   +P R    
Sbjct: 40  TNSQNSSVGSVHSPILESPTSLNRQHRNSFSFNNVSSPSLEDERLINFP-RVNPNRLM-- 96

Query: 101 DTSKRPSD 78
            TSKRP++
Sbjct: 97  -TSKRPNE 103


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -3

Query: 329 EFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 204
           + HS+ S+ +NT+ +++S   +S+ +V+     V T     K
Sbjct: 735 DLHSSLSDAKNTNAILSSELTKSSEDVKRLTANVETLTQDSK 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,085
Number of Sequences: 5004
Number of extensions: 56185
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)