Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31648
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   2.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.9  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   6.8  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   9.0  

>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 320 SWSHDEYLYQFLLHNKSTIPEKGLYMIRYHSFY 418
           S S+ E+  Q LLH +S IP K +     +SF+
Sbjct: 222 SVSYSEFDEQLLLHARSLIPSKAVVEFLINSFF 254


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 293  HCGIDNLLMSWSHDEYLYQFLLHNKSTIPE 382
            HCGI  LL+  S  +YL   LL   S +PE
Sbjct: 1219 HCGISELLIHLSQAQYL--ILLKLASNLPE 1246


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -3

Query: 621  KDVMLSPFADSRDVLLNELFVVRPKGSMSGTFS--LFVYKSYLLNSV 487
            KDV+ S F D   V+L     ++P+   + TF+    +  SYLL  V
Sbjct: 1727 KDVLESCFVDIYSVILECFLAIQPRSFPAFTFAWLSLISHSYLLPKV 1773


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 434 GDYRHLSNEKDEEILKW 484
           GD+R+LS +K   ILKW
Sbjct: 217 GDFRYLSIKKRVRILKW 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,574
Number of Sequences: 5004
Number of extensions: 60489
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)