Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31648
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0471 + 21130839-21130869,21131013-21131127,21132228-211323...   246   1e-65
11_06_0437 - 23533218-23536382                                         28   7.1  
06_03_1250 + 28709429-28710208                                         28   9.4  
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830     28   9.4  
03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905...    28   9.4  

>06_03_0471 +
           21130839-21130869,21131013-21131127,21132228-21132309,
           21132444-21132648,21133237-21133296,21133420-21133472,
           21133589-21133711,21133844-21133913,21134012-21134090,
           21134172-21134253,21134272-21134310
          Length = 312

 Score =  246 bits (603), Expect = 1e-65
 Identities = 109/184 (59%), Positives = 136/184 (73%), Gaps = 3/184 (1%)
 Frame = +2

Query: 2   DESDPDTDLPNIVHAFQTAERIREDHPDEDWFHLTGLIHDLGKVM---AFYDEPQWCVVG 172
           D+SDPD D+P I H  QTAE IR+D PDEDW HLTGLIHDLGKV+   +F + PQW VVG
Sbjct: 106 DDSDPDLDMPQIEHLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSVVG 165

Query: 173 DTFPVGCKWADSIVYGPESFKDNPDTYNPKYNTKYGMYKPHCGIDNLLMSWSHDEYLYQF 352
           DTFPVGC + +  V+  + FK+NPD  NPK NTK+G Y   CG+DN+LMSW HD+Y+Y  
Sbjct: 166 DTFPVGCAFDECNVHF-KYFKENPDYLNPKLNTKFGAYSEGCGLDNVLMSWGHDDYMYLV 224

Query: 353 LLHNKSTIPEKGLYMIRYHSFYPWHAGGDYRHLSNEKDEEILKWVTEFNKYDLYTKSEKV 532
              NK+T+P  GL++IRYHSFYP H  G Y HL N++D+E LKW+  FNKYDLY+KS + 
Sbjct: 225 AKENKTTLPSAGLFIIRYHSFYPLHKHGAYMHLMNDEDKENLKWLRVFNKYDLYSKSNER 284

Query: 533 PDIE 544
            D+E
Sbjct: 285 IDVE 288


>11_06_0437 - 23533218-23536382
          Length = 1054

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 80  PDEDWF-HLTGLIHDLGKVMAFYDEPQWCVVGD 175
           PD   F H+   IHDL + +AF+   Q C VGD
Sbjct: 505 PDGSHFDHIRCKIHDLLRQLAFHLSRQECFVGD 537


>06_03_1250 + 28709429-28710208
          Length = 259

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 386 GLYMIRYHSFYPWHAGGDYRHLSNEKDEEILKWVTEFNKYDLYTKSEKVPD 538
           GL+     +F    AG  Y+   N    +++ W+ E N  D+  KS+++ D
Sbjct: 107 GLFEWVVMTFGSKSAGATYQRAMNYIYHDLIGWLVEVNIDDVVVKSKEIED 157


>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
          Length = 763

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +2

Query: 221 PESFKDNPDTYNPKYNTKYGMYKPHCGIDNLLMSWSHDEY 340
           P      P+ Y  +Y  +YG   PH   D L  S   D Y
Sbjct: 86  PPPLGRGPEHYRSRYTGRYGSGFPHSPNDQLHRSMHRDRY 125


>03_04_0228 -
           18989688-18989807,18990300-18990345,18990452-18990552,
           18990624-18990702,18990788-18990868,18991440-18991502,
           18994171-18994246,18994980-18995246,18995994-18996076,
           18996792-18996922,18997043-18997174
          Length = 392

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
 Frame = +2

Query: 179 FPVGCKWADSIVYGPESFKDNPDTYNPKYNTKYGMYKPHCGIDNLLMSWSHDEYLYQFLL 358
           FP G  +A S V G  S +   D      + K G+ +P C + +L   +   E  Y F  
Sbjct: 200 FPNGTGYALSSVEGRVSMEFF-DLSESAQSKKIGVVRPCCLLRSL--KFVCRELRYAFKC 256

Query: 359 HNKSTIPEKGLY---MIRYHSFYPWHAGGDYRHLSNEKDEEILKWVTEFNKY 505
           H KS      +Y    I +H  Y   A G      N  D    K + +++KY
Sbjct: 257 HRKSEAGRDTVYPVNAIAFHPIYGTFATGGCDGFVNVWDGINKKRLYQYSKY 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,944,906
Number of Sequences: 37544
Number of extensions: 414340
Number of successful extensions: 822
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)