Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31648
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   4.1  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   5.5  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   7.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.5  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 138 HFMTSRSGAWSETLSPLVVNGLTLSSMVPRASR 236
           +F     G +  +LSP+ VNG       P +SR
Sbjct: 250 NFQWGEEGIFGMSLSPIAVNGYRTLFFHPLSSR 282


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 606 ITSHLYRNNRNYCSYISKLYL*IV 677
           +++    NN NY +Y  KLY  I+
Sbjct: 318 LSNKTIHNNNNYKNYNKKLYYNII 341


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 227 SFKDNPDTYNPKYNTKY 277
           ++ +N + YN  YNT Y
Sbjct: 93  NYNNNYNNYNNNYNTNY 109


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 236 DNPDTYNPKYNTKYGMYKPH 295
           +NP + N  YN  Y  Y  H
Sbjct: 85  NNPLSNNYNYNNNYNNYNKH 104


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 627 NNRNYCSYISKLY 665
           NN NY +Y  KLY
Sbjct: 334 NNNNYNNYNKKLY 346


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 203 DSIVYGPESFKDNPDTYNPKY 265
           DS+ Y PE  +  PD    +Y
Sbjct: 168 DSVEYKPEIMEYKPDVEEQRY 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,910
Number of Sequences: 438
Number of extensions: 4829
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)