Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31646
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        31   0.080
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   1.7  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   4.0  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   6.9  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   6.9  

>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 31.1 bits (67), Expect = 0.080
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = -3

Query: 358 KGKNRKSIVFFCRLIKYKANVSNNKMPIEMYTVPRRMRSIF-FFKSSSCLYLANS 197
           K KN+K I+    L  YK + S+    ++MY V  RM SI+ F K+ S ++LA+S
Sbjct: 25  KNKNKKRILSI--LPYYKNSYSDFISVLQMYKVHIRMVSIYIFLKALSNIFLASS 77


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -1

Query: 252 ECVQFFFLNLHLVSIWPIRQQNQNSLTNKTIFL 154
           E ++F F++LH V++    QQ  ++L+ K +FL
Sbjct: 480 EYIEFEFVDLHEVAVGTPLQQFVHNLSQKLLFL 512


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 198 RQQNQNSLTNKTIFL*ATPRSRTIISLYE*ICYLLLSILFHYSLF 64
           +++N   +T   + + +TP S+    LYE   YL++   FHYS+F
Sbjct: 574 KEENYAIITLSLVKIASTPMSK----LYE--DYLVMLFAFHYSMF 612


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 313 KYKANVSNNKMPIEMYTVPRRMRSIFFFKSSSCLYLANSTTKSKFTH 173
           ++K+ VS  K   E+  VPR    +    S S   L    T S F+H
Sbjct: 410 EWKSRVSKYKYAFELEDVPRTADYLEVIYSYSYPALPTDLTGSSFSH 456


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 237 KIERILLGTVYISIGILLFETLALYLI 317
           K ERIL    Y SIGI LF  +  Y+I
Sbjct: 546 KDERILKLQTYWSIGINLFILIGCYVI 572


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,324
Number of Sequences: 5004
Number of extensions: 35392
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)