Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31646
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.092
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   8.0  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   8.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.1 bits (57), Expect = 0.092
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 229 KSSSCLYLANSTTKSKFTHQQDNIFVSHTTKQNYH 125
           +S  C      T  +   H+ DN   SHTT +N H
Sbjct: 208 QSPLCPPAPRLTNSNSIKHESDNSDYSHTTDENRH 242


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = -3

Query: 250 MRSIFFFKSSSCLYLANSTTKSKFTHQQDNIFVSHTTKQNYHLPLRVNLL 101
           M++I       C  L    ++ K+T + DN+ +         L   VN L
Sbjct: 1   MKTILIALVPVCFLLGEVFSEDKYTTKYDNVDIDVVLNTERLLNAYVNCL 50


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = -3

Query: 250 MRSIFFFKSSSCLYLANSTTKSKFTHQQDNIFVSHTTKQNYHLPLRVNLL 101
           M++I       C  L    ++ K+T + DN+ +         L   VN L
Sbjct: 1   MKTILIALVPVCFLLGEVFSEDKYTTKYDNVDIDVVLNTERLLNAYVNCL 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,335
Number of Sequences: 438
Number of extensions: 2337
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)