Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31645
(384 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC073275-1|AAQ93366.1| 111|Homo sapiens unknown protein. 29 3.9
X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein. 28 8.9
X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for ... 28 8.9
M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipopr... 28 8.9
M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein. 28 8.9
M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein. 28 8.9
J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipopr... 28 8.9
BC028030-1|AAH28030.1| 529|Homo sapiens pyruvate dehydrogenase ... 28 8.9
AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (inclu... 28 8.9
AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein. 28 8.9
AB037769-1|BAA92586.1| 545|Homo sapiens KIAA1348 protein protein. 28 8.9
>AC073275-1|AAQ93366.1| 111|Homo sapiens unknown protein.
Length = 111
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 57 IHIFNYKTLIT*TYLQCKMYNHTQTQQEHFYLQCFFYSLLYCYMIRHNTF 206
I+I+ KT I YL+CK +T + + +Y+ F L C + H F
Sbjct: 42 IYIYKRKTYIYFNYLKCKNLPNTNGKSDVYYIILLFVHL--CDLFTHFMF 89
>X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein.
Length = 4560
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 176 ILLYDKTQYFLSLNLKKITLNSRRHFENKL*TLIK 280
+ L T+YF LN+ K+ +S+ N++ TL+K
Sbjct: 2878 LTLDSNTKYFHKLNIPKLDFSSQADLRNEIKTLLK 2912
>X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for
apolipoprotein B-100. ).
Length = 4563
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 176 ILLYDKTQYFLSLNLKKITLNSRRHFENKL*TLIK 280
+ L T+YF LN+ K+ +S+ N++ TL+K
Sbjct: 2881 LTLDSNTKYFHKLNIPKLDFSSQADLRNEIKTLLK 2915
>M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 (apoB) gene, exons 22 through 29. ).
Length = 4563
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 176 ILLYDKTQYFLSLNLKKITLNSRRHFENKL*TLIK 280
+ L T+YF LN+ K+ +S+ N++ TL+K
Sbjct: 2881 LTLDSNTKYFHKLNIPKLDFSSQADLRNEIKTLLK 2915
>M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein.
Length = 3262
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 176 ILLYDKTQYFLSLNLKKITLNSRRHFENKL*TLIK 280
+ L T+YF LN+ K+ +S+ N++ TL+K
Sbjct: 1580 LTLDSNTKYFHKLNIPKLDFSSQADLRNEIKTLLK 1614
>M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein.
Length = 4563
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 176 ILLYDKTQYFLSLNLKKITLNSRRHFENKL*TLIK 280
+ L T+YF LN+ K+ +S+ N++ TL+K
Sbjct: 2881 LTLDSNTKYFHKLNIPKLDFSSQADLRNEIKTLLK 2915
>J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 mRNA, complete cds. ).
Length = 4563
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 176 ILLYDKTQYFLSLNLKKITLNSRRHFENKL*TLIK 280
+ L T+YF LN+ K+ +S+ N++ TL+K
Sbjct: 2881 LTLDSNTKYFHKLNIPKLDFSSQADLRNEIKTLLK 2915
>BC028030-1|AAH28030.1| 529|Homo sapiens pyruvate dehydrogenase
phosphatase isoenzyme 2 protein.
Length = 529
Score = 28.3 bits (60), Expect = 8.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 105 CKMYNHTQTQQEHFYLQ 155
CK Y HT T+++ F+LQ
Sbjct: 60 CKAYRHTSTEEDDFHLQ 76
>AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (including
Ag(x) antigen) protein.
Length = 4563
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 176 ILLYDKTQYFLSLNLKKITLNSRRHFENKL*TLIK 280
+ L T+YF LN+ K+ +S+ N++ TL+K
Sbjct: 2881 LTLDSNTKYFHKLNIPKLDFSSQADLRNEIKTLLK 2915
>AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein.
Length = 3929
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 176 ILLYDKTQYFLSLNLKKITLNSRRHFENKL*TLIK 280
+ L T+YF LN+ K+ +S+ N++ TL+K
Sbjct: 2881 LTLDSNTKYFHKLNIPKLDFSSQADLRNEIKTLLK 2915
>AB037769-1|BAA92586.1| 545|Homo sapiens KIAA1348 protein protein.
Length = 545
Score = 28.3 bits (60), Expect = 8.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 105 CKMYNHTQTQQEHFYLQ 155
CK Y HT T+++ F+LQ
Sbjct: 76 CKAYRHTSTEEDDFHLQ 92
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,606,711
Number of Sequences: 237096
Number of extensions: 674852
Number of successful extensions: 1132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2583773550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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