Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31643
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    31   0.14 
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    29   0.76 
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.8  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   1.8  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   7.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   7.1  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   9.3  

>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +2

Query: 389 AIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKG---WLNSII 559
           A+   G+GR+ + L  V G    S+ +  +  S IL             +G   +L    
Sbjct: 68  AMNEIGFGRYQWYLFFVAGFGWMSDNIWPVCTSLILMRLDEVDGPHPPAEGRAPYLTLSQ 127

Query: 560 FIGMMVGAYAWGSVADSLGRK 622
            +G++VGA  W   AD++GR+
Sbjct: 128 NLGLLVGAMVWSLSADTIGRR 148


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +2

Query: 419 HYMLLAVCGLVSTSEEMDVISMSFILPSAQ-CDLDLTTQTKGW--LNSIIFIGMMVGAYA 589
           H++ +AV G+   S+     S+  ++   +    + TT  K    +  I ++G +VG  +
Sbjct: 75  HFLNVAVAGVALMSDGYCSNSIGTVITILRKLYPEETTHNKSLQDIGMIAYVGTIVGQLS 134

Query: 590 WGSVADSLGRKRVLIAISI 646
           +G  +D  GRK  +I  +I
Sbjct: 135 FGWYSDRFGRKNGMITATI 153


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 381 KSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL 250
           KS  S +   SG+D  F +  ++ ++++L  GP    SP  S L
Sbjct: 129 KSVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = +2

Query: 272  LQLNGPGSKTAELGVVPSVKKSKSDPEXGSNSEKADFERAIELTGYGRFHYMLLAVCGLV 451
            L +N         G +P++  S S     +++      R + +T + R  Y+ + +  ++
Sbjct: 1302 LDVNNQRHTLISAGRIPNLDFSDSVTSMEASTFHDGSIRLVVVTKWSRIVYLDVGMMRVL 1361

Query: 452  STSE-EMDVISMSFILPSAQCDLDLTTQTKGWL 547
            S+ +  +   S + ++ S  C+  L   TKGWL
Sbjct: 1362 SSDQLPLQCGSATSVVVSEGCNWALIGTTKGWL 1394


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 263 LHHNCEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGVVALPTAYSLPV 117
           LH + ED+ + G FL S A  R+C   +   + +    + L + +  P+
Sbjct: 125 LHASLEDASSVGLFLLSLASERVCFSESANSQEIESIDLGLGSQFGYPI 173


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 5   LQHRLLVLSSPHLTRTVHSHLKWRNAH 85
           L+H LL   S  L + + S LKWRN H
Sbjct: 369 LRHELL---SAGLQKAIDSLLKWRNRH 392


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 240 LGPGSVSTILCGRAALYGGRGDTQTSLTGGSGA 142
           + PGS   +L G A L G  G   +S+  G G+
Sbjct: 436 IAPGSPIIVLGGPALLVGLGGGAASSMNAGEGS 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,036
Number of Sequences: 5004
Number of extensions: 57391
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)