Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31639
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    27   1.5  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    27   1.5  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   6.0  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    25   6.0  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    24   7.9  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    24   7.9  

>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 216 SVGMNPRNGMIVNANGTDAGLATCDVRRIMNHRHH 320
           SV  NP N  I+    TD  +A  D+R  +N R H
Sbjct: 286 SVAFNPHNDFILATCSTDKTIALWDLRN-LNQRLH 319


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 314 APRNDRWKEPEPRAEERXNSRWPSDDVRRTTS 409
           APR  R+   E   +ER  SR P+ D R  +S
Sbjct: 39  APRESRYYRKEEHLQERSRSRSPARDSRWKSS 70


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 312 RHHGMTXGKSRSQELKSVXIH 374
           R H M  GK  SQEL+ + +H
Sbjct: 626 RSHKMLEGKELSQELEDLSLH 646


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 210 GSPF*DPLSRPRSLRWCRASY 148
           G P  +PLS  +S +W +ASY
Sbjct: 138 GLPIPEPLSVTKSRKWRKASY 158


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 322 PWCRWFIILLTSHVARPASVPF-AFTIIPF 236
           P C W   LL ++  +   VPF AF   PF
Sbjct: 824 PTCPWISDLLKTYFPQDPEVPFLAFPDFPF 853


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 277 RPASVPFAFTIIPFLGFIPTLWWFAILRS 191
           RP S      II  L ++P + WF ++RS
Sbjct: 474 RPFSRLHVENIIQILRYLPEVKWFDVVRS 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,130,404
Number of Sequences: 5004
Number of extensions: 15157
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)