Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31639
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   4.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   4.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   4.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   4.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   4.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   4.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   4.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   4.1  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   5.4  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   5.4  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    20   9.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    20   9.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    20   9.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    20   9.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 355 SSWLRLFPXVIPWCRWFIILLTSHVARPASVP 260
           S+W R F  +I W  +FI++ T  +     VP
Sbjct: 399 SAW-RHFAAIIEWLSFFIVIFTYIIILITLVP 429


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -2

Query: 72  PPNDERLSRDS---LGRVSKLERLDSS 1
           PPNDE +  DS    G +++   LDS+
Sbjct: 195 PPNDEGIETDSDRRKGSIARCWSLDST 221


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 294 RRIMNHRHHGMTXGKSRSQE 353
           R   NH HH     +SRS++
Sbjct: 3   RNTTNHSHHDERFRQSRSED 22


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 294 RRIMNHRHHGMTXGKSRSQE 353
           R   NH HH     +SRS++
Sbjct: 3   RNTTNHSHHDERFRQSRSED 22


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 294 RRIMNHRHHGMTXGKSRSQE 353
           R   NH HH     +SRS++
Sbjct: 3   RNTTNHSHHDERFRQSRSED 22


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 294 RRIMNHRHHGMTXGKSRSQE 353
           R   NH HH     +SRS++
Sbjct: 3   RNTTNHSHHDERFRQSRSED 22


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 294 RRIMNHRHHGMTXGKSRSQE 353
           R   NH HH     +SRS++
Sbjct: 3   RNTTNHSHHDERFRQSRSED 22


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 294 RRIMNHRHHGMTXGKSRSQE 353
           R   NH HH     +SRS++
Sbjct: 3   RNTTNHSHHDERFRQSRSED 22


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 294 RRIMNHRHHGMTXGKSRSQE 353
           R   NH HH     +SRS++
Sbjct: 3   RNTTNHSHHDERFRQSRSED 22


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 294 RRIMNHRHHGMTXGKSRSQE 353
           R   NH HH     +SRS++
Sbjct: 3   RNTTNHSHHDERFRQSRSED 22


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 248 DHSISRIHSNALVVRHSEIHCLDRGPC 168
           D  I RI  N  ++ +     LD GPC
Sbjct: 27  DMDIDRILQNGRILTNYIKCMLDEGPC 53


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 248 DHSISRIHSNALVVRHSEIHCLDRGPC 168
           D  I RI  N  ++ +     LD GPC
Sbjct: 27  DMDIDRILQNGRILTNYIKCMLDEGPC 53


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 170 RDRGRDSGSQNGEPPERWNESEKW 241
           RDR R+   ++ +  + +NE EK+
Sbjct: 6   RDRNREYRKKDRQYEKLYNEKEKF 29


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 170 RDRGRDSGSQNGEPPERWNESEKW 241
           RDR R+   ++ +  + +NE EK+
Sbjct: 6   RDRNREYRKKDRQYEKLYNEKEKF 29


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 170 RDRGRDSGSQNGEPPERWNESEKW 241
           RDR R+   ++ +  + +NE EK+
Sbjct: 6   RDRNREYRKKDRQYEKLYNEKEKF 29


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 170 RDRGRDSGSQNGEPPERWNESEKW 241
           RDR R+   ++ +  + +NE EK+
Sbjct: 6   RDRNREYRKKDRQYEKLYNEKEKF 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,200
Number of Sequences: 438
Number of extensions: 1297
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)