Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31637
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 75 9e-15
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.0
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i... 26 3.9
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 26 5.2
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 6.9
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 6.9
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 9.1
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 9.1
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.1
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 74.9 bits (176), Expect = 9e-15
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Frame = +3
Query: 213 HLAVQAIIRSYQARGHLAADVDPLGITTATLPELGMRAPSSELIMRKYFNFDEADMDRVF 392
++ VQ ++R+YQ+RGH A +DPLGI + PS EL + Y F E+D++R
Sbjct: 125 YMKVQLLVRAYQSRGHHLAKLDPLGIN------VNHNRPS-ELTLEHY-GFTESDLNRTI 176
Query: 393 KLPSTTFIGEKE---KALPLREILNRLEQAYCNNIGIEFMFINSLEQCNWIRQRMEPPNV 563
L +E K + LREI+ E+ YC + +EF I+S ++ NWI +E P
Sbjct: 177 HLGPGILPNFREAGRKTMTLREIVETCEKIYCGSFAVEFTHISSRKRSNWILSHLETPTP 236
Query: 564 TKMNADQE 587
+ + DQ+
Sbjct: 237 FRYSHDQK 244
Score = 42.3 bits (95), Expect = 6e-05
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 8 DPNSVHASWDAFFRNA-TNGAQPGAAYTPPPNL 103
DPNSVHASW A+F+N G P A+ PP L
Sbjct: 66 DPNSVHASWQAYFKNVQERGVSPSKAFQAPPLL 98
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -2
Query: 412 NVVEGSLNTLSMSASSKLKYFLMMSSELGARMPSSGSVAVVMPSGSTSAA 263
N+VEG+ ++ S S+SS +S + PS+ S + S S+S++
Sbjct: 109 NIVEGAASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSS 158
>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
5-->4-isomerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = -2
Query: 592 ASSWSAFIFVTFGGSMRCRIQLHCSREFMNMNSIPMLLQY 473
A+ W + G R R+Q C+ + N+ +L+Y
Sbjct: 278 AAEWVCYFLKKEPGFTRFRVQFSCANRYFNIQKAEDVLKY 317
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +3
Query: 69 SQAPHTRRRPISRHTTRNEVPLTSLVPSSGGMP 167
SQ+PH+ ++P+ ++R++ S S+ +P
Sbjct: 148 SQSPHSPKKPVKNSSSRDQPVRNSGATSTASLP 180
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 163 IPPLDGTSDVSGTSFLVVWREIGRRRVCGAWLSSVCRIAE 44
+ PL+ V+ T LV R + RR+ A ++S C I E
Sbjct: 994 LKPLNTDLIVNKTGKLVALRPLVNRRLADAGIASRCEICE 1033
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 394 LNTLSMSASSKLKYFLMMSSELGARMPSS 308
++T++ S SK +YFL+ + R PSS
Sbjct: 1966 ISTMNRSCDSKCRYFLLTAIANQLRYPSS 1994
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 376 SASSKLKYFLMMSSELGARMPSSGSVAVVMPSGSTSAAR*PR 251
SAS+ + F+ SS G MP S S++ + S S PR
Sbjct: 1356 SASTSDRRFVNASSTSGMNMPISSSISAKISSIQNSTKYSPR 1397
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +3
Query: 465 EQAYCNNIGIEFMFINSLEQCNW 533
E A CNN G F + C W
Sbjct: 29 ESAQCNNCGGPFTWFRRRHHCRW 51
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 54 RQTELSQAPHTRRRPISRHTTRNEVPLTSL 143
R L +A HTR RP+ N VPL L
Sbjct: 18 RIVPLFRANHTRFRPVDEKNRINAVPLLLL 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,127
Number of Sequences: 5004
Number of extensions: 56102
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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