Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31637
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.5  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   5.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   5.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   5.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.9  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 229 ACTAR*SSI-IFSFIGEPAEIEGIPPLDGTSDVSGTSFLV 113
           +CT+  S I IFS +G  A  +  P  D  +   G +FLV
Sbjct: 376 SCTSMLSGIVIFSVVGFMAHEQQKPVADVAASGPGLAFLV 415


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 456 NRLEQAYCNNIGIEFMFINSLEQ 524
           N  ++ YCNN    +  IN +EQ
Sbjct: 94  NNYKKLYCNNYKKLYYNINYIEQ 116


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 456 NRLEQAYCNNIGIEFMFINSLEQ 524
           N  ++ YCNN    +  IN +EQ
Sbjct: 94  NNYKKLYCNNYKKLYYNINYIEQ 116


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 456 NRLEQAYCNNIGIEFMFINSLEQ 524
           N  ++ YCNN    +  IN +EQ
Sbjct: 94  NNYKKLYCNNYRKLYYNINYIEQ 116


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 591 PLPGQRSSLLRSVAPCAVGS 532
           P P   SS   SV+P ++GS
Sbjct: 91  PSPSSPSSFFSSVSPTSLGS 110


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 416 RRKRKSAPVERNSES 460
           +RKRKS+ +E  SE+
Sbjct: 215 KRKRKSSTIENESET 229


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 164 HSAARWHERCERD 126
           H    +H+RC RD
Sbjct: 12  HGGLYYHQRCSRD 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,083
Number of Sequences: 438
Number of extensions: 4049
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)