Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31632
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    33   0.013
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   3.4  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   4.5  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    25   5.9  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   5.9  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    24   7.8  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    24   7.8  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 33.5 bits (73), Expect = 0.013
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 57  ADLPRHRLVQDQRIQIRLPVHCPNERDRISGARSAELRVHIRDIREGSL 203
           A L  H ++    ++ R   HCP E  + S  RS+ L+ HI  I EG++
Sbjct: 217 AHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 199 DPSRISRICTRSSADRAPDILSRSFGQ*T 113
           D S+IS I  +++     DILSRS G  T
Sbjct: 394 DQSKISEIAVKTAMASTADILSRSKGSAT 422


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 55  QLTYRDIVLYKINEYKYG 108
           QL Y D++LY IN Y  G
Sbjct: 426 QLHYHDLILYVINTYYSG 443


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 205 TDGNGGYPIVKSGGVGQKFVKLKLKSQRGHGFNFTVTIYG 324
           T GNGGY ++K G    +     L S      +  V +YG
Sbjct: 45  TYGNGGYTVLKDGFQVSRTSDYILYSVEAEHIDKVVALYG 84



 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 30  PKPRPKSRPADLPRHRLVQDQRIQI 104
           PK  PKS+P  + RHR   D+  +I
Sbjct: 126 PKVNPKSQPLVIIRHR-ASDEHFEI 149


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 88  INEYKYGFPFIVRTSEIEYPEPGQQNFAYISAIYVKD 198
           + E K+GF   ++   +EY +  ++N + IS +Y +D
Sbjct: 643 LKEGKWGFEDFLKQGLVEYVDVNEENDSLIS-VYERD 678


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 220 GYPIVKSGGVGQKFVKLKLKSQRGHGFNFTVTIYGKY*FIC 342
           GY +V S   G K  +    + RG GF +  + YG    +C
Sbjct: 309 GYSVVGSHS-GVKICRWTKSAMRGRGFCYKYSFYGIRSHLC 348


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +1

Query: 25  SAQSHDLSLGQLTYRDIVLYKINEYKYGFPFIVRTSEIEYPEPGQQNFAYISAIYVKDHY 204
           S + H++S+  LT     LYK  +    FP++VR   ++ P P         AI      
Sbjct: 150 STKYHEISIDDLTDAQRKLYKSKK----FPYVVR-FRMKEPSPFTDLVYGKIAIKSDSRE 204

Query: 205 TDGNGGYPIVKSGG 246
            + +  + I+KS G
Sbjct: 205 IEESNNFVILKSDG 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,387,349
Number of Sequences: 5004
Number of extensions: 27414
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)