Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31632
(404 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0697 - 5948664-5948770,5949077-5949563 31 0.46
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 28 3.2
09_05_0012 - 20063456-20064601 27 7.5
08_01_0991 + 10030636-10031064,10031209-10031364,10031443-100315... 27 7.5
04_03_0359 - 14864750-14864998,14865122-14865345,14867358-148674... 27 7.5
05_06_0104 - 25603568-25603867,25603965-25604162,25604247-256045... 26 9.9
05_05_0125 - 22561972-22562028,22562318-22562416,22562496-225626... 26 9.9
02_04_0500 + 23500769-23500951,23501200-23501285,23501442-235014... 26 9.9
01_07_0094 - 41049644-41050214,41050441-41050688,41050887-41051168 26 9.9
>12_01_0697 - 5948664-5948770,5949077-5949563
Length = 197
Score = 30.7 bits (66), Expect = 0.46
Identities = 20/91 (21%), Positives = 39/91 (42%)
Frame = +1
Query: 25 SAQSHDLSLGQLTYRDIVLYKINEYKYGFPFIVRTSEIEYPEPGQQNFAYISAIYVKDHY 204
S+ D+ + + + Y I+E + F + + + +P + N ++ +Y K H
Sbjct: 29 SSPKEDMDVNMVCMLPMEFYAIDEAEVA-QFSLGPKDAVFEKPDESN-RHMKPLYFKGHI 86
Query: 205 TDGNGGYPIVKSGGVGQKFVKLKLKSQRGHG 297
DG ++ GG F+ L + GHG
Sbjct: 87 -DGKPVSRMLVDGGAAMNFMPYSLFKKLGHG 116
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 24 QRPKPRPKSRPADLPRHRLVQDQRIQI--RLPVHCPNER 134
QR +P P+ +PA PR R ++RI+ R P P R
Sbjct: 1007 QRREPSPRRKPASPPRKRTPPNRRIESPRRQPDPSPRRR 1045
>09_05_0012 - 20063456-20064601
Length = 381
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 9 FAVGLQRPKPRPKSRPADLPRHRLVQDQRIQIRLPVHC 122
F GL KP P++R RH V+ + +IR+PV+C
Sbjct: 112 FLRGLAVAKPPPRNRD----RHVKVEGRGRRIRMPVNC 145
>08_01_0991 +
10030636-10031064,10031209-10031364,10031443-10031554,
10031710-10031876,10031962-10032848,10032927-10032987,
10033009-10033097,10033180-10033468,10033520-10033564
Length = 744
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 3 RVFAVGLQRPKPRPKSRPADLPRHRLVQDQRIQ 101
RV A P RP RPA P R QD+ Q
Sbjct: 376 RVIARPTTTPGGRPPKRPASAPSARPTQDRHAQ 408
>04_03_0359 -
14864750-14864998,14865122-14865345,14867358-14867475,
14867586-14867960,14869257-14869673
Length = 460
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 365 RPLLGVRQQINQYFP*MVTVKLKP 294
R +LG R + +Q+F +TV LKP
Sbjct: 277 RAVLGTRDEYDQFFAVQLTVDLKP 300
>05_06_0104 -
25603568-25603867,25603965-25604162,25604247-25604526,
25604615-25605419,25605518-25606673
Length = 912
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 81 VQDQRIQIRLPVHC-PNERDRISGARSAELRVHIRDIRE 194
++ +RIQ+ + H E+D+ S AR E++ + D+R+
Sbjct: 418 LERKRIQLEVEHHALEKEKDKASKARLVEVKKELDDLRD 456
>05_05_0125 -
22561972-22562028,22562318-22562416,22562496-22562624,
22563312-22563355,22563570-22563642,22563791-22563877,
22563985-22564069,22565460-22565533,22565612-22566192,
22566275-22568270
Length = 1074
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 205 CSDPSRISRICTRSSADRAPDILSRSFGQ 119
C P+ + ++C S+ D +I S SFG+
Sbjct: 486 CRVPANVDKVCDVSNEDTELEIASPSFGK 514
>02_04_0500 +
23500769-23500951,23501200-23501285,23501442-23501490,
23501560-23501746,23502214-23502371,23502447-23502515,
23502692-23502750,23503140-23503176,23503493-23503564,
23503694-23503841,23504124-23504219,23505042-23505181,
23505304-23505419,23505614-23505659,23505747-23505923
Length = 540
Score = 26.2 bits (55), Expect = 9.9
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = +1
Query: 25 SAQSHDLSLGQLTYRDIVLYKINEYKYGFPFIVRTSEIEY------PEPGQQNFAYISAI 186
SA+ LG+L + + LY+I+ Y G + + + P + N A + +
Sbjct: 189 SAEELSAQLGEL-FNEQQLYRIDHY-LGKELVQNLLVLRFANRLFLPLWNRDNIANVQIV 246
Query: 187 YVKDHYTDGNGGY 225
+ +D T+G GGY
Sbjct: 247 FREDFGTEGRGGY 259
>01_07_0094 - 41049644-41050214,41050441-41050688,41050887-41051168
Length = 366
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 60 DLPRHRLVQDQRIQIRLPVHCPNERDRISGARSAELRV 173
D P H +V D+R Q R+PV E R S LR+
Sbjct: 48 DRPDHAVVDDERAQERIPVIDVGELQRGSEDELDNLRL 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,642,361
Number of Sequences: 37544
Number of extensions: 209413
Number of successful extensions: 835
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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