Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31632
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   0.75 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.0  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +1

Query: 10  LLSACSAQSHDLSLGQLTYRDIVLYKINEYKYGFPFIVRTSEIEYPEPGQQNF 168
           L S C +  +++++      DIVL  +  + +GF     T ++  P  G   F
Sbjct: 51  LESGCVSLKNEVNIMMKNVVDIVLGGLTYWAFGFAMSFGTDKLNNPFIGMGEF 103


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/49 (20%), Positives = 20/49 (40%)
 Frame = +1

Query: 70  DIVLYKINEYKYGFPFIVRTSEIEYPEPGQQNFAYISAIYVKDHYTDGN 216
           ++ L +++   YG      T  + Y  P  +N  Y++   +      GN
Sbjct: 242 NLTLKEVDNKVYGMALSPVTHNLYYNSPSSENLYYVNTESLMKSENQGN 290


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 37  HDLSLGQLTYRDIVLYKINEYKYGFPFIVRT 129
           ++L LG   +RD V   + ++K G P  + T
Sbjct: 186 NNLPLGLEVWRDKVFITLPKWKDGIPVTLTT 216


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 211 GNGGYPIVKSGGVGQKFVKLKLKS 282
           G GG P+V +GG  + + + +L++
Sbjct: 575 GVGGVPVVGAGGGRRAYTEEELQA 598


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 336 YLLTYTEERSFYSGFLF 386
           Y++  +   SFYS FL+
Sbjct: 948 YIVDESSSSSFYSSFLY 964


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,199
Number of Sequences: 438
Number of extensions: 2218
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)