Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31624
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    77   2e-15
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    25   7.2  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    25   7.2  

>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
 Frame = +3

Query: 240 FQYNSVDTSLLXNYVMHPFW-NWCVQFCPVWVAPXXXXXXXXXXXXXXXXXXSYYDYGFY 416
           ++Y+++D SLL  Y++ P+W N  ++  P+ +AP                    Y Y + 
Sbjct: 14  YKYSAIDNSLLSKYILKPYWWNQLLKVIPMSMAPNLITLIGLGFVVINILTMLVYKYHY- 72

Query: 417 ALTGDNATKGRIPPWVWAASAVNLFVAYTLDGIXGKQARRTGTSGPLGELFXHGLD 584
                       P WV+A+ A+ LF+  + D I G QARRTGTS PLG+LF HG+D
Sbjct: 73  -------EMDAFPSWVYASWAIGLFLYQSFDAIDGSQARRTGTSSPLGQLFDHGVD 121


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = -2

Query: 549 RLYRCDALVSRXYHLKYMQQRDSQQTRPTPKVVSCLW*HYLQSKRRIHNHNMRKAR 382
           R+Y      S   H  +MQ+   ++ + T  +++ L    + + R I++HN   +R
Sbjct: 93  RVYALKFKSSSQIHFYWMQEYSDEKDKETASLINQLIADPVNTTRTINSHNNSSSR 148


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +3

Query: 399 YDYGFYALTGDNATKG--RIPPWV 464
           +D GF+AL G++  +G  R+P W+
Sbjct: 243 HDRGFHALVGNDKFRGPHRVPVWL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,376
Number of Sequences: 5004
Number of extensions: 46188
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)