Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31624
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    25   0.64 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    25   0.64 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.9  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 495 QQRDSQQTRPTPKVVSCLW*HYLQSKRRIHNHNMRKARN 379
           Q R  ++T   PK++S L  +Y  S    +N+N     N
Sbjct: 68  QDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYN 106


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 495 QQRDSQQTRPTPKVVSCLW*HYLQSKRRIHNHNMRKARN 379
           Q R  ++T   PK++S L  +Y  S    +N+N     N
Sbjct: 68  QDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYN 106


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 194 KLNHFTHFVFLEPFQFILRQ 135
           KLN+F   + L  + F LRQ
Sbjct: 219 KLNYFIEDIGLNTYYFFLRQ 238


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -2

Query: 495 QQRDSQQTRPTPKVVSCLW*HYLQSKRRIHNHNMRKARN 379
           + R  ++    PK++S L  +Y  S    +N+N     N
Sbjct: 301 RDRTERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNN 339


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 642 PRPFRIYCKDMSV*GLRSXNQVRGXKVR 559
           P P    C+D+SV G     +V+   +R
Sbjct: 443 PLPLHTECEDLSVSGEAGIEEVKSPVLR 470


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 642 PRPFRIYCKDMSV*GLRSXNQVRGXKVR 559
           P P    C+D+SV G     +V+   +R
Sbjct: 443 PLPLHTECEDLSVSGEAGIEEVKSPVLR 470


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 135 GNEPWCSKCMFL 100
           G+ PW  +C FL
Sbjct: 922 GSNPWSCRCKFL 933


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,050
Number of Sequences: 438
Number of extensions: 3450
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)