Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31623
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 347 6e-97
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 347 8e-97
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 347 8e-97
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 179 3e-46
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 161 8e-41
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 99 5e-22
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 50 4e-07
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 1e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.008
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.015
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.24
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.31
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.42
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.3
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.3
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.7
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 2.9
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 5.1
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 6.8
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 6.8
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 25 6.8
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 9.0
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 347 bits (854), Expect = 6e-97
Identities = 161/208 (77%), Positives = 182/208 (87%)
Frame = +3
Query: 3 KFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK 182
KFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIK
Sbjct: 41 KFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIK 100
Query: 183 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 362
NMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T
Sbjct: 101 NMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT-- 158
Query: 363 PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKE 542
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K
Sbjct: 159 GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKA 218
Query: 543 XKADGKCLIEALDAILPPARPTDKPLRL 626
GK L+EA+D+I PPARPTDKPLRL
Sbjct: 219 GVVKGKTLLEAIDSIEPPARPTDKPLRL 246
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 347 bits (853), Expect = 8e-97
Identities = 160/208 (76%), Positives = 182/208 (87%)
Frame = +3
Query: 3 KFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK 182
KFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIK
Sbjct: 41 KFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIK 100
Query: 183 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 362
NMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T
Sbjct: 101 NMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT-- 158
Query: 363 PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKE 542
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K
Sbjct: 159 GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKA 218
Query: 543 XKADGKCLIEALDAILPPARPTDKPLRL 626
GK L+EA+D+I PPARPTDKPLRL
Sbjct: 219 GVVKGKTLLEAIDSIEPPARPTDKPLRL 246
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 347 bits (853), Expect = 8e-97
Identities = 160/208 (76%), Positives = 182/208 (87%)
Frame = +3
Query: 3 KFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK 182
KFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIK
Sbjct: 41 KFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIK 100
Query: 183 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 362
NMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T
Sbjct: 101 NMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT-- 158
Query: 363 PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKE 542
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K
Sbjct: 159 GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKA 218
Query: 543 XKADGKCLIEALDAILPPARPTDKPLRL 626
GK L+EA+D+I PPARPTDKPLRL
Sbjct: 219 GVVKGKTLLEAIDSIEPPARPTDKPLRL 246
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 179 bits (436), Expect = 3e-46
Identities = 98/211 (46%), Positives = 126/211 (59%), Gaps = 3/211 (1%)
Frame = +3
Query: 3 KFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK 182
K EA GKGSF YAW+LD + ER RG+T+D+A FE+ K I DAPGHRDFI
Sbjct: 211 KLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFIS 270
Query: 183 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 362
MI G S AD AVL+V + FE G +NGQTREHA L LG+ +++V VNK+D
Sbjct: 271 GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS- 329
Query: 363 PYSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKGWQVE 533
+SE RF+EIK VS + IK +G+ + V FVPIS G N++ + S W+K
Sbjct: 330 -WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK----- 383
Query: 534 RKEXKADGKCLIEALDAILPPARPTDKPLRL 626
G L+ ALD ++PP +P KPLRL
Sbjct: 384 -------GPTLLSALDQLVPPEKPYRKPLRL 407
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 161 bits (391), Expect = 8e-41
Identities = 75/177 (42%), Positives = 116/177 (65%), Gaps = 4/177 (2%)
Frame = +3
Query: 3 KFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK 182
K E+EA+E GK S+ +W LD ERE+G T+++ FET +++DAPGH+ ++
Sbjct: 272 KIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVT 331
Query: 183 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 362
NMI G SQAD VL+++A GEFEAG + GQTREHA+LA T G+ L+V +NKMD
Sbjct: 332 NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV 391
Query: 363 PYSEPRFEEIKKEVSSYIKKI-GYNPAA-VAFVPISGWHGDNMLE--PSTKMPWFKG 521
+SE R++E ++S +++++ GYN V ++P+S + G N+ + S+ PW++G
Sbjct: 392 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQG 448
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 99.1 bits (236), Expect = 5e-22
Identities = 53/130 (40%), Positives = 79/130 (60%)
Frame = +3
Query: 24 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 203
++G+ SF +DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG +
Sbjct: 79 DLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138
Query: 204 QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRF 383
D A+++V+A G+ QTREH LLA +GVKQ++V +NK+D EP E
Sbjct: 139 TMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVE 191
Query: 384 EEIKKEVSSY 413
E+++ +S Y
Sbjct: 192 MEMRELLSEY 201
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 49.6 bits (113), Expect = 4e-07
Identities = 36/98 (36%), Positives = 50/98 (51%)
Frame = +3
Query: 57 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 236
V+D L AER+RGITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-- 124
Query: 237 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 350
+ AG+ QT+ A G+ ++I VNKMD
Sbjct: 125 ---DGSAGV--EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 60 LDKLKAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 227
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 228 VAAGTG 245
V A G
Sbjct: 155 VDASQG 160
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +3
Query: 138 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 317
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 318 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 416
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect = 0.008
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 30 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 203
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 204 QADCAVLIVAAGTG 245
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.015
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Frame = +3
Query: 60 LDKLKAERERGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIK 182
+D ++ ERE+GITI A W+ FE S Y + IID PGH DF
Sbjct: 102 MDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTI 160
Query: 183 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 290
+ D AVL++ A +G I+ + Q R +
Sbjct: 161 EVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.24
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 135 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 245
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.31
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 63 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 185
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.42
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 147 IIDAPGHRDFIKNMITGTSQADCAVLIV 230
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 135 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 230
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 135 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 230
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 78 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 230
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 367 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSV 537
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 124 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWAS 14
S F IS+ +P FSL+ ++ K LPI W S
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCS 439
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.4 bits (53), Expect = 6.8
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +1
Query: 433 TQLLSLSCPFLDGTETTCWSLQPKCLGSRDGRWSVKXAKLTENASLKLSMPSCHLPAPLT 612
T L L+ F T+T W++ PK L R R + A L N L + H P +
Sbjct: 360 TPLGELNWIFTAITDTIAWNVFPKHLFRRLFRQDLMVAALFRNFLLAERIMLVHSCHPQS 419
Query: 613 SP 618
SP
Sbjct: 420 SP 421
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 6.8
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 345 MDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 515
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 463 LDGTETTCWSLQPKCLGSRDGRWSVKXAKLTENASLK 573
LD + W++QP C + DG A L++NA LK
Sbjct: 149 LDKLKDRLWNVQPTCALTGDGLLE-GLAWLSQNAKLK 184
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 396 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 521
KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,820
Number of Sequences: 5004
Number of extensions: 59038
Number of successful extensions: 206
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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