Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31615
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.39 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   3.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.3  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +1

Query: 49  TSLR*LYKFIKFTMSSRKTAGRRINKKRAQRATSNV---FAMFDQAQIAEFKEAFNMIDQ 219
           T+ R  Y F+ F+   R   GR+    + +   S +   F +    + +EF+   ++I +
Sbjct: 470 TANRHYYAFVPFSAGPRSCVGRKYAMLKLKIVLSTILRNFRVRSDVKESEFRLQADIILK 529

Query: 220 NRDGF 234
             DGF
Sbjct: 530 RADGF 534


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 337 FTMFLTLFGERLQGTDPEDVIKNA 408
           FT+ +T+ GE  +GT P   +  A
Sbjct: 182 FTISVTIDGETFEGTGPSKKLAKA 205


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 190 FKEAFNMIDQNRDGF 234
           F++A  M+D+N +GF
Sbjct: 220 FQKALRMVDENINGF 234


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 180 NSRVQGGFQYD 212
           NSR+ GG+++D
Sbjct: 633 NSRIWGGYKFD 643


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 180 NSRVQGGFQYD 212
           NSR+ GG+++D
Sbjct: 633 NSRIWGGYKFD 643


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/44 (22%), Positives = 19/44 (43%)
 Frame = -2

Query: 258 IMQIVLVNESIPVLINHIESLLELCYLSLIKHSKHIGGSTLCAL 127
           I+ IV+ N  +   ++      E+C L+  +    +   T C L
Sbjct: 500 IVDIVMANGEVATSLSDGSYFGEICLLTNARRVASVRAETYCNL 543


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +1

Query: 118 INKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGFIDKDD 249
           +NK+ A R  S +      + +A+F +  +      + F+  DD
Sbjct: 109 VNKEYAIRGNSAILKCVVPSFVADFVKVLSWHTDQGEEFVPGDD 152


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/44 (22%), Positives = 19/44 (43%)
 Frame = -2

Query: 258 IMQIVLVNESIPVLINHIESLLELCYLSLIKHSKHIGGSTLCAL 127
           I+ IV+ N  +   ++      E+C L+  +    +   T C L
Sbjct: 468 IVDIVMANGEVATSLSDGSYFGEICLLTNARRVASVRAETYCNL 511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,181
Number of Sequences: 438
Number of extensions: 2248
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)