Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31603
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.5  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    20   9.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    20   9.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -2

Query: 332 GQYGNDHVDSINGCSNGVGWRHSVLGRCVQCIFGR 228
           GQ G   +D+I       GW H +    V C   R
Sbjct: 350 GQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTR 384


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = +3

Query: 3    PVALRPRTRPHAKLRKNKFKMAARTILST 89
            P+A++ +  PH + ++ + K+ A+ + S+
Sbjct: 1093 PIAVQIQQSPHQQQQQQQQKILAKVLTSS 1121


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 373 PSLPRYTSSTTLLLVNME 320
           P +P Y+SS  + L N+E
Sbjct: 273 PHVPEYSSSIIMELHNIE 290


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 373 PSLPRYTSSTTLLLVNME 320
           P +P Y+SS  + L N+E
Sbjct: 288 PHVPEYSSSIIMELHNIE 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,783
Number of Sequences: 438
Number of extensions: 2612
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)