Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31602
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   4.6  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    26   4.6  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.0  

>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +2

Query: 248 RVVYYKSYYIFLYTVLATLLLSREIVS 328
           RV+YYK +++ L T+++  L S ++++
Sbjct: 379 RVLYYKDFFMDLSTIISNFLPSMKLLA 405


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 664 TLDSTSNCQCCRRETKVSKIVCDSLYFSSLARR 566
           T  +T  C  CRR+   +K++C  +   S  ++
Sbjct: 236 TTAATQKCPVCRRKVHPNKVICLEMMLGSQKKK 268


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 266  FYNILLLIYVCSVLAHPHYSYPFT*NTRIYGNHFCLVPNVISVNNDVSN 120
            F +I  +I  C +   P     FT       +H  L+P V+ VNND  N
Sbjct: 1734 FVDIYSVILECFLAIQPRSFPAFTFAWLSLISHSYLLPKVLLVNNDKIN 1782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,206
Number of Sequences: 5004
Number of extensions: 49942
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)