Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31602
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671...    30   2.1  
07_01_1197 - 11372764-11373174                                         28   6.3  

>04_04_0965 -
           29762388-29762564,29764272-29766361,29766567-29767170,
           29768395-29768637,29768704-29770203
          Length = 1537

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 238 CALCSHTHITPTHLHETHGSMGII 167
           CAL SH+   P HL E HGS+ ++
Sbjct: 825 CALDSHSPAVPLHLVELHGSLCMV 848


>07_01_1197 - 11372764-11373174
          Length = 136

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 652 TSNCQCCRRETKVSKIVCDSLYFS 581
           T++ QCC R +   K++C  L FS
Sbjct: 111 TNDLQCCSRPSSPGKLICKKLGFS 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,632,332
Number of Sequences: 37544
Number of extensions: 270130
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)