Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31602
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    30   1.4  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z48809-7|CAA88744.1|  367|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF358857-1|AAK52772.1|  367|Caenorhabditis elegans REF-1 protein.      28   7.5  
Z48716-1|CAA88601.1|  482|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 592 LYFSSLARRVLLTRKHHGIQFNQPILKSVKAKIFSDI*TRPLIIYISKL 446
           L F S+   V L   H+GI      + ++   +FSDI T PLI+ +S L
Sbjct: 214 LTFKSIQVLVCLMTNHNGISLTSLFIYAI---VFSDIITTPLIVQMSYL 259


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 284 IKIYNNFYNILLLIYVCSVLAHPHYSYPFT*NTRIYGNHFCLVP-NVISVNNDV 126
           I I   F +I+L +Y C  L  P    P   +T  +GN   L P N++SV   +
Sbjct: 30  IYISTTFSSIILSLYFCGPLVSPMGPLPARCDTFFWGNFSFLCPKNLLSVQRSL 83


>Z48809-7|CAA88744.1|  367|Caenorhabditis elegans Hypothetical
           protein T01E8.2 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 544 HGIQFNQPILKSVKAKIFSDI*TRPLIIYISKL*KYFEYTVLPRPFF 404
           H I   +   K++  + F     R L++  + L K+FE+++ P+P F
Sbjct: 236 HAIAEGKKTAKNIAFQFFKS--DRHLVVRCADLEKFFEFSLSPKPLF 280


>AF358857-1|AAK52772.1|  367|Caenorhabditis elegans REF-1 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 544 HGIQFNQPILKSVKAKIFSDI*TRPLIIYISKL*KYFEYTVLPRPFF 404
           H I   +   K++  + F     R L++  + L K+FE+++ P+P F
Sbjct: 236 HAIAEGKKTAKNIAFQFFKS--DRHLVVRCADLEKFFEFSLSPKPLF 280


>Z48716-1|CAA88601.1|  482|Caenorhabditis elegans Hypothetical
           protein F59B10.2 protein.
          Length = 482

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -1

Query: 601 CDSLYFSSLARRVLLTRKHHGIQFNQPILKSVKAKIFSD 485
           C  LY S LA+ V L  +HH   +++P  +S+K+ +F +
Sbjct: 15  CAPLYSSLLAQCVPLPLQHH---YHRPHYESLKSSVFDE 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,413,562
Number of Sequences: 27780
Number of extensions: 271278
Number of successful extensions: 539
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)