Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31602
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.6  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 191 NTRIYGNHFCLVPNVISVNNDVSN 120
           NT+ YG +  L  +++  N D  N
Sbjct: 376 NTKFYGMYDILARDILGYNFDFQN 399


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 191 NTRIYGNHFCLVPNVISVNNDVSN 120
           NT+ YG +  L  +++  N D  N
Sbjct: 376 NTKFYGMYDILARDILGYNFDFQN 399


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 622 FLSGNIDSSKLN 657
           +L G+IDSSK+N
Sbjct: 507 YLYGSIDSSKIN 518


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 226 SHTHITPTHLHETHGS 179
           SH H TP H H +H +
Sbjct: 424 SHIHATPHH-HHSHAA 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,283
Number of Sequences: 438
Number of extensions: 3443
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)