Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31599
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    31   0.16 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   1.9  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.6  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   7.9  

>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 172 SVLQRVNQRKILYTFSPHANAIT*G*RKKKQHCNKNNIQYILNHLIPFRMDFF 14
           +V + V + K++Y    H            QH N+NN  YI+N   PF   FF
Sbjct: 146 NVWKFVEEAKVIYVGGFHLTVSPESMLCLAQHANENNKPYIMNLSAPFLSQFF 198


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 149  LIYTLQDTTFILSLKAIKAFVNGFLMLMLSRYVDTVIFKF*RFKCLTLK 295
            +IY   D   I   K  K  + GF++ +LS  ++  ++K   +  LTLK
Sbjct: 1036 VIYNFVDDLVIFLKKCDKTLIEGFVLPILSIKIEKSLYKGFCYLYLTLK 1084


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 574 LLIFRIFNIVDSLWIYVLDLL*YGNQRFFFCYSI 675
           +++  +F+I+DSLW + L  + +G    FFC+ I
Sbjct: 500 VILIELFSILDSLWFHPLYFM-FGFS--FFCFGI 530


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 679 RKYCNKKKISGSHIIINLIRISKENQLC*ICEILEEKRN 563
           R Y  KK+ SG +  + +I  S  + L  I  +L EKRN
Sbjct: 541 RVYLAKKRSSGKYFALKMIPKSSLDSLKKIKGLLLEKRN 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,318
Number of Sequences: 5004
Number of extensions: 32882
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)