Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31597
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    28   1.3  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   2.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.0  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    26   5.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   6.9  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   9.1  

>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 587 HETILDELTNIFKSRQPPSNSISFGSPVIPPPANFSAPTVTLKRPS 450
           H  + +  T+ F +R+P  N+   G P++  P N+   ++    PS
Sbjct: 233 HPFMQESKTSPFATRRPSLNTDHHGRPILLSPLNYQNSSLNPSTPS 278


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 560 NIFKSRQPPSNSISFGSPVIPPPANFSA 477
           ++  +  PP   IS   P+ P P+ FSA
Sbjct: 256 SVSSASDPPQTPISMSPPIPPTPSQFSA 283


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/51 (19%), Positives = 27/51 (52%)
 Frame = +3

Query: 414  NLLATFCNRLHKRGSLQSNGGRREVSWRWNHRRTEADRIAGRLARLEYVGQ 566
            N+L  +C +L K   + ++ G +   ++    R+  +R+  ++ + +Y+ Q
Sbjct: 3244 NILPDYCKQLFKEDFIVNSNGLKSYIFKLRKWRSYFERLLSKVPKKQYLEQ 3294


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +3

Query: 408 TRNLLATFCNRLHKRGSLQSNGGRREVSWRWNHRRTEADRIAG---RLARLEYVGQLIED 578
           T NLL   C+ LH R  LQ    R E   + NH    +DRI+    +    E++  L  D
Sbjct: 635 TLNLLDHGCSELHHRLKLQ----REEYERQQNHIYKLSDRISNFREKAWSTEHLEHLTSD 690

Query: 579 GLVTERNAD 605
             + E+  D
Sbjct: 691 MSMCEKRID 699


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 509 PVIPPPANFSAPTVTLKRPSL 447
           P IPPP+  SAP +  K P +
Sbjct: 147 PSIPPPSPASAPPIPSKAPPI 167


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/18 (55%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = -2

Query: 542 QPPSN-SISFGSPVIPPP 492
           QPP++  I+ G+PV+PPP
Sbjct: 468 QPPTSLGINNGNPVMPPP 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,772
Number of Sequences: 5004
Number of extensions: 37260
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)