Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31597
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536...    32   0.44 
06_01_0757 + 5659081-5659605,5659694-5659919,5659994-5660333,566...    31   0.77 
12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269           31   1.0  
04_04_1421 - 33449539-33449994                                         29   2.3  
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428...    28   5.4  
01_06_1445 - 37405483-37406199                                         28   5.4  
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649...    27   9.4  

>07_03_1778 +
           29451902-29452166,29452665-29452849,29453504-29453693,
           29453990-29454168,29454263-29454314,29454426-29454553,
           29454920-29455099,29455209-29455276,29455364-29455506,
           29455682-29455743,29455874-29455987,29456180-29456320,
           29456680-29456832,29456973-29457026,29457102-29457212,
           29457339-29457512,29457600-29457680,29457788-29457886,
           29457905-29458057
          Length = 843

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = -2

Query: 635 NDITRTNVPDIRISFRHETILDELTNIF 552
           NDI +TNVP IRI FRH T+L   +++F
Sbjct: 776 NDIHQTNVPHIRIEFRH-TLLCLESDLF 802


>06_01_0757 +
           5659081-5659605,5659694-5659919,5659994-5660333,
           5660677-5661025,5661121-5661723
          Length = 680

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 444 HKRGSLQSNGGRREVSWRWNHRRTEADRIAGRLARLEYVGQLIEDGLVTERNADI 608
           HKR S++S   ++ +  + +H+  E D +AG + +L     L+E  +V   NA I
Sbjct: 564 HKRRSVKSPT-KKTLKHKTSHKEEEQDELAGSILKLANKLALVEQSIVGGPNASI 617


>12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269
          Length = 658

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 223 QNILTKFDFSSKQIHVTVDLKIITTLCYPS 134
           Q++L  FD  SK++ ++  L++ T  CYPS
Sbjct: 540 QDVLFSFDIRSKRVLMSKSLEMRTDFCYPS 569


>04_04_1421 - 33449539-33449994
          Length = 151

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 539 PPSNSISFGSPVIPPPANFSAPTVTLKRP 453
           PP  + ++G P  PPPA ++ P     RP
Sbjct: 71  PPPPAGAYGYPAQPPPAGYAYPAANAGRP 99


>05_03_0627 -
           16342211-16342264,16342332-16342412,16342751-16342849,
           16343660-16343770,16343964-16344116,16344741-16344881,
           16345456-16345513,16345852-16345967,16346292-16346405,
           16346496-16346557,16348788-16348930,16349030-16349097,
           16349200-16349379,16349835-16350013,16350447-16350636,
           16350920-16350978,16351421-16351574,16352133-16352158,
           16352567-16353014
          Length = 811

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 635 NDITRTNVPDIRISFR 588
           NDI +TNVP IR+ FR
Sbjct: 750 NDIHKTNVPHIRVQFR 765


>01_06_1445 - 37405483-37406199
          Length = 238

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 542 QPPSNSISFGSPVIPPPA 489
           QPP N   +G P+ PPPA
Sbjct: 8   QPPLNDAYYGPPIPPPPA 25


>01_05_0024 -
           17262504-17263308,17264251-17264399,17264879-17264978,
           17265829-17265953,17267565-17267743,17269648-17270698
          Length = 802

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/62 (25%), Positives = 24/62 (38%)
 Frame = -2

Query: 635 NDITRTNVPDIRISFRHETILDELTNIFKSRQPPSNSISFGSPVIPPPANFSAPTVTLKR 456
           +D  +   PD+  S  H     +      +  PPS +    +P  PPP        TL+R
Sbjct: 53  SDFAQGETPDLVASHAHLAAPTQAAASVSAPPPPSTAAVLIAPSPPPPPFLDFSHATLQR 112

Query: 455 PS 450
            S
Sbjct: 113 SS 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,371,656
Number of Sequences: 37544
Number of extensions: 215429
Number of successful extensions: 706
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)