Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31596
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.93 
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    26   5.0  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   8.7  

>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 469 ENFIFIALIRKCNRDEIERTLFSKMKTPTVFTSAHN*QLAAEFSA 603
           E+  F +   K +RD  +  L S ++TP+V TS++    +++ SA
Sbjct: 369 ESNTFASDFSKVDRDATQAALSSSLETPSVLTSSYKPSSSSKVSA 413


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 375 SLRVEKYFYWQPHYLNIICSSDFYYLNTD 289
           S+RV K  YWQ  Y     +  FY+ N D
Sbjct: 111 SIRVSKLRYWQRDYRLAFPNFIFYFDNVD 139


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 363 EKYFYWQPHYLNIICSSDFYYL 298
           E+Y +W    L IICS  +  L
Sbjct: 232 ERYIFWDSSTLRIICSHTYQVL 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,512
Number of Sequences: 5004
Number of extensions: 43986
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)