Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31589
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 165 4e-42
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 42 3e-05
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 40 2e-04
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 31 0.11
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 29 0.33
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.43
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 1.3
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 2.3
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 4.0
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 5.3
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 7.0
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 7.0
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 7.0
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass... 25 7.0
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun... 25 7.0
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 24 9.3
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 24 9.3
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 24 9.3
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2... 24 9.3
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 165 bits (400), Expect = 4e-42
Identities = 78/120 (65%), Positives = 98/120 (81%), Gaps = 1/120 (0%)
Frame = +2
Query: 68 SKGGLRTIAN-EENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGD 244
+K +R++ N +E+E R+G +F+VSGPVV A M G +MYELVRVG+ ELVGE+IR+ D
Sbjct: 8 AKKAIRSLKNYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQD 67
Query: 245 MATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPK 424
TIQVYEETSG+TVGDPV RTGKPLSVELGPG+ +I+DGIQRPLK I + +QSIYIP+
Sbjct: 68 KCTIQVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPR 127
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 42.3 bits (95), Expect = 3e-05
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Frame = +2
Query: 116 FGYVFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGVT 286
+ V +++GP+V + + E+V + + G+++ + G A +QV+E TSGV
Sbjct: 24 YNTVNSITGPLVILDNIRRPQYNEIVNLNLPDGSVRSGQVLEVAGHKAIVQVFEGTSGVD 83
Query: 287 VGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 382
V + TG + + + +LG +F+G P+
Sbjct: 84 VRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPI 116
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 39.9 bits (89), Expect = 2e-04
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +2
Query: 236 EGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIY 415
E + TI + + T G+ G V+ TG P+S+ +GPG LG I + I P+ + + Y
Sbjct: 102 ENTVRTIAM-DGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKY 160
Query: 416 IP 421
P
Sbjct: 161 SP 162
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 30.7 bits (66), Expect = 0.11
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 235 KTDNLTDEFIVTDTDQLVHSRSGHFFGSDDGSRYGEDISEPLLILLIGDRP 83
+T +L E DTD+ VHS+S GS+ S D E +I ++G P
Sbjct: 180 RTPSLVPEHYFDDTDKSVHSKSSS--GSNSLSEASNDDLESSIIQIVGGLP 228
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 29.1 bits (62), Expect = 0.33
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 302 VLDHLQLHLKFLRIPGWWPC 243
V+D L + LR+P WWPC
Sbjct: 67 VVDISNLVIYALRVPNWWPC 86
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.43
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 369 IPSKMEPKIPGPSSTDKGFPVRSTGSPTVTPE 274
IPS + P P T GFP R PT+ P+
Sbjct: 368 IPSTLPPADGVPKPTPDGFPRRFERDPTIPPD 399
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2
Query: 177 ADPDIFSAVTTGPDTAKTYPN 115
AD +F AV PDTAK YPN
Sbjct: 33 ADAVVFKAVGVAPDTAK-YPN 52
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 236 EGDMATIQVYEETS-GVTVGDPVLRTGKPLSVE 331
E D A++ + T+ +T DPV + KPL++E
Sbjct: 572 ENDKASVSITTTTTPSITPADPVPTSPKPLAIE 604
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 4.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 272 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 400
TS +TVGD V+ + + LGS++ +++ D+ +L
Sbjct: 375 TSNLTVGDLVMINQLVFQLSIPLNFLGSVYREMRQAFTDMEQL 417
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 168 DIFSAVTTGPDTAKTYPNLSSFSSLAIVLK 79
D + GP +T+PN+ S +SLA+ K
Sbjct: 244 DTHLPIKMGPLDVQTHPNIRSIASLALSRK 273
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 24.6 bits (51), Expect = 7.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 306 RSTGSPTVTPEVSSYT 259
RS G+PT PE +YT
Sbjct: 1553 RSLGTPTALPETQTYT 1568
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 342 PGPSSTDKGFPVRSTGSPTVTPEVSS 265
P PS FP ST +P+ P +S
Sbjct: 378 PNPSVASPAFPNSSTSNPSTAPASAS 403
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 193 DQLVHSRSGHFFGSDDGSRYGED 125
D L+ ++ GHFF +D G G D
Sbjct: 661 DNLLITKDGHFFHADFGYILGRD 683
>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
assembly of the V-ATPase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 186
Score = 24.6 bits (51), Expect = 7.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 284 TVGDPVLRTGKPLSVELG 337
T DPVL++ + L++ELG
Sbjct: 158 TTNDPVLQSNEQLAIELG 175
>SPCC11E10.07c |||translation initiation factor eIF2B alpha
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -1
Query: 406 LSQLVDVLEGTLNTVKDGTQD 344
+S+ +D+L+ NT+K+G Q+
Sbjct: 55 ISEFMDILQNGSNTLKEGVQN 75
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 24.2 bits (50), Expect = 9.3
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 319 RLSSTEY-WITYSYT*SFFVYLDGG 248
RLSS + WIT S + SF YL GG
Sbjct: 21 RLSSKDARWITSSGSSSFDYYLSGG 45
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = -1
Query: 418 DVDGLSQLVDVLEGTLNTVKDGTQDTRTKFY*QRLSSTEYWITYSY 281
D+D ++ L +N + D TK+Y + WIT Y
Sbjct: 38 DLDATKDQIETLTQEINFLIDLNSVHITKYYASFVDGFRLWITMEY 83
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -2
Query: 351 PKIPGPSSTDKGFPVRSTGSPTVTPE 274
PK PGPS P + T+T E
Sbjct: 457 PKRPGPSDNGNEIPTKFVQKVTITKE 482
>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 24.2 bits (50), Expect = 9.3
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 143 PVVTA--EKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGVTVGDP 298
PVVT + G + ++ R GY + ++ + + +Q+++E G+ DP
Sbjct: 206 PVVTGFFGMVPGGLLSQIGR-GYTDFCAALLAVGLNADELQIWKEVDGIFTADP 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,819
Number of Sequences: 5004
Number of extensions: 33809
Number of successful extensions: 135
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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