Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31589
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   4.6  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   4.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 135 YLDPSSLPKKCPDLLCTSWSVSVTMNSSVRLSVLKVTWPPSRYTKKLQV 281
           +LD S++P +       S  V+  +  + + S +  + PP  YTK + +
Sbjct: 264 WLDQSAVPAR------VSLGVTTLLTMATQTSGINASLPPVSYTKAIDI 306


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 135 YLDPSSLPKKCPDLLCTSWSVSVTMNSSVRLSVLKVTWPPSRYTKKLQV 281
           +LD S++P +       S  V+  +  + + S +  + PP  YTK + +
Sbjct: 264 WLDQSAVPAR------VSLGVTTLLTMATQTSGINASLPPVSYTKAIDI 306


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 122 YVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATI 256
           Y+F   G V  A        YE+ R    +L+ EI+  E D  T+
Sbjct: 407 YLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILERENDSGTL 451


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 338 PGILGSIFDGIQRPLKDINELTQSIY 415
           PGILG IF  +   L        S+Y
Sbjct: 338 PGILGGIFGALMAALATEASYDYSLY 363


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 177 ADPDIFSAVTTGPDTAKTYPNLSS 106
           A+P    A TT P TA    +LS+
Sbjct: 22  ANPGTIQACTTSPATASLESSLSA 45


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 380  GDAEYRQRWNPRYQDQVLLTKAFQYGVLDHL 288
            GD++ RQR  PR  D + L+ A     + HL
Sbjct: 922  GDSDIRQRPIPR-SDDIRLSPAAYTANVSHL 951


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 160 FGSDDGSRYGEDISEP 113
           FG DD S YG    EP
Sbjct: 11  FGVDDVSLYGTPKEEP 26


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 160 FGSDDGSRYGEDISEP 113
           FG DD S YG    EP
Sbjct: 11  FGVDDVSLYGTPKEEP 26


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 160 FGSDDGSRYGEDISEP 113
           FG DD S YG    EP
Sbjct: 11  FGVDDVSLYGTPKEEP 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,220
Number of Sequences: 438
Number of extensions: 2222
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)