Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31587
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces pombe... 26 4.0
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 25 7.0
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 25 7.0
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 25 7.0
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 7.0
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 25 7.0
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p... 25 9.2
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 25 9.2
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 9.2
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 9.2
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 9.2
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 25 9.2
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 9.2
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 9.2
>SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 148
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 437 AIQTAMIAALVLHYGGAPMKGGIFLSVYCAIVSVL--VSGYTSTDILWTMQAVTVPIILI 610
A+Q+ IAAL+ G +KG F+ +Y S L V Y T+ T + I +
Sbjct: 71 AVQSYSIAALLQLTGTVTLKGAFFVGLYVFGASGLPDVVDYMFTESRGTPYILVKTISSL 130
Query: 611 AKSI 622
KS+
Sbjct: 131 VKSV 134
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = -1
Query: 391 IAISKVRSDSKQLQINSINIDSFGTLTL*NFENLWYFYQYGP*NDADSETFAECG 227
+ + KV + Q +++ + G L++ +F N+W Q P + ++ F + G
Sbjct: 254 VHVVKVADITIQKRLDEFKLTESGDLSIADFRNIWLEGQSDPPSFTKNQKFQQYG 308
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 338 YGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAM 454
YGV L + A AY Y MG+P + E ++ A+
Sbjct: 309 YGVSLNHSSSKAAIAYMYFMGYPVAENTESITKLLENAL 347
>SPAC17C9.10 |stm1||G-protein coupled receptor
Stm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 287 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSY-VMGFPFSAWGEGTF 433
PQI K ++KS EG++I ++ L A N +Y++ ++ FP S + T+
Sbjct: 195 PQIIKNHKAKSTEGLSI--IFFVL-ASVGNTSYAFSILVFPASDYLNYTY 241
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1136
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Frame = -3
Query: 587 QPAW-SIIYQWRYNH 546
QP W +I++ WRY H
Sbjct: 1016 QPCWYNILFSWRYKH 1030
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 66 IFNTCVRIYFYLFLLKHARSFR 1
IF CV Y F+LKHA+ +R
Sbjct: 217 IFFGCVIGYLLSFILKHAQKYR 238
>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 9.2
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = -2
Query: 336 ILIPSALLLCKILKICGTFTSMDPRMMPIPRPLLSVDLKHGTSRKLYFRKYSL*HF*DNT 157
IL + LLC+ L + + + PIPRP L LK+ F +S+ F +
Sbjct: 27 ILDLNGTLLCRALAVRSEKSVYEASRNPIPRPGLHNFLKY------IFANFSVMVFSSSK 80
Query: 156 PNNNPFKISAM 124
P+N +SA+
Sbjct: 81 PHNVQAMLSAI 91
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 481 TIVEY*SCYHCRLDG*KCSFTPCTEWETHYIAI 383
T +E YHC ++G K SFT + + H I
Sbjct: 228 TTLEERKTYHCPMEGCKKSFTRSSALKKHISVI 260
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/52 (21%), Positives = 27/52 (51%)
Frame = +1
Query: 157 GVVSKVLQRILSKVQFS*CTMFQIHTQQRSRNRHHSRVHTGKSTTNFQNFTK 312
G+ ++ R++S+++ + Q H Q+ S ++HH + S++ + K
Sbjct: 524 GMSMEMANRVISEIRTTKIYKAQQHKQKSSHHKHHHHKKSKSSSSKHKENDK 575
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/56 (23%), Positives = 23/56 (41%)
Frame = -1
Query: 379 KVRSDSKQLQINSINIDSFGTLTL*NFENLWYFYQYGP*NDADSETFAECGFETWY 212
+V S + L + + NI GTLT + ++W + N + + WY
Sbjct: 4 RVVSPNPMLSLETENIAKMGTLTADSLGSMWNVFTKCAENLENGRRLENISWRLWY 59
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 137 LKGLLLGVLSQKCYNEYFLKYN 202
L LLLG+LS+ Y EY ++ N
Sbjct: 506 LSDLLLGILSEIKYYEYLVRKN 527
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 383 YSYVMGFPFSAWGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCAIVS 535
Y V FS W +F + + A +V Y + GG +V+C +++
Sbjct: 53 YKPVFKREFSTWATFSFAFSISGLFATVVTTYSYPLISGGAPSAVWCWLIA 103
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 494 SLERHHSGVLKLLSLPFGWLKMFLHPMH 411
S+E+ S + KL + PF + +HP H
Sbjct: 629 SIEQSSSFLTKLYTFPFTIITWLMHPTH 656
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 336 ILIPSALLLCKILKICGTFTSM 271
I I SALLLC IL FTS+
Sbjct: 453 IYIVSALLLCTILPSAVAFTSL 474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,925
Number of Sequences: 5004
Number of extensions: 60017
Number of successful extensions: 128
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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