Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31586
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...   161   1e-40
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    31   0.21 
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    28   1.1  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.4  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    27   3.4  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    26   4.5  
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S...    25   7.9  

>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score =  161 bits (390), Expect = 1e-40
 Identities = 86/219 (39%), Positives = 133/219 (60%), Gaps = 2/219 (0%)
 Frame = +2

Query: 41  QIRLIRYYTASENAKVTYHEEMQNNFIATNIFQKALLTCGSAVIALLDPHRG-DMIACLG 217
           Q+RL+  +TA+E  KV Y        +  +  Q+  L  GSA++ L  P RG DMI+ LG
Sbjct: 33  QLRLL--FTAAER-KVNYP-----GHVPLSPLQRIFLVAGSAIMGLKAPWRGGDMISVLG 84

Query: 218 EVTGENAIKY-MHSKMLQTEEGQDILKNKPRINSKTIAFETLSQMPENSLGRVYADFMKD 394
           + +G+    + + +KML  + G++ILK+KPR+ SK++    L  +P N+LG++Y D++  
Sbjct: 85  DASGQPFFLHRLLNKMLVDKTGREILKDKPRMTSKSLNLPFLRTLPPNTLGKIYVDWIDK 144

Query: 395 NNITADSRLPVQFIADPELAYVMQRYREVHDLVHASLFMKTNMLGEVTVKWVEGIQTKLP 574
            ++  D+R P +F+ DPE AYVMQRYRE HD  HA   M TN+ GE+ +KW+E +   LP
Sbjct: 145 EHVGPDTRSPTRFVDDPEEAYVMQRYRESHDFYHAICNMPTNIEGELAIKWLEFVNMGLP 204

Query: 575 MCIGGGIWGAARLRPKHRQMYLKYYLPWAIRTGNNAKFL 691
           +     ++G  RL  +    + + Y+PW+IR G NAK L
Sbjct: 205 VGALSALFGPLRLNCEQASRFRRVYIPWSIRNGLNAKTL 243


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +2

Query: 353 ENSLGRVYADFMKDNNITADSRLPVQFIADPELAYVMQRYREVHDLVHASLFMKTNMLGE 532
           ENS G    D    N  ++DSR   Q +    +AY  + Y E  D    +L    ++ G 
Sbjct: 9   ENSKGNSATDADTKNPSSSDSRAIEQLVTQGNMAYAQKNYEEAVDKYGQALMQSESIHGS 68

Query: 533 VTVK 544
            +++
Sbjct: 69  ESLE 72


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 425 VQFIADPELAYVMQRYREVHDLVHASLFMKTNMLGEVTVKWVEG 556
           V  +  P++A +  + R +  L  + LF K + LG +  +WV+G
Sbjct: 270 VSRLLQPKIANITVQ-RPIDKLAKSKLFHKYSTLGHIEYRWVDG 312


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 230 ENAIKYMHSKMLQTEEGQDILKNKPRINSKTIAFETLSQMPENSLGR 370
           E  +K +H   L  ++ + I + K RIN  T  +ETL    ++S G+
Sbjct: 150 EKQVKTLHD--LNEQKDKKIKELKERINDLTYDYETLKANADDSEGK 194


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 261 ILLCIYFIAFSPVTSPKQAIISP 193
           ILLCI+F  FS ++ P     SP
Sbjct: 42  ILLCIFFTIFSTMSHPSLQCFSP 64


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 281 QDILKNKPRINSKTIAFETLSQMPENSL 364
           +D+LK KPR+NS  I    LS   E +L
Sbjct: 99  KDVLKGKPRLNSSKIHSVILSPTRELAL 126


>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 305 RINSKTIAFETLSQMPENSLGRVYADFMKDNNITADSRLPVQFIADPELAYVMQRYR 475
           +I SK +   T + +PENS+   Y   + +N    +  + ++  AD     ++ R R
Sbjct: 184 KIQSKPLGTMTEAAIPENSIYYPYRKLILENRNPVEKFVTIEEFADAAYPQLVGRGR 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,618
Number of Sequences: 5004
Number of extensions: 60004
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)