Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31586
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0602 + 5394341-5394520,5395083-5395586                          153   2e-37
04_04_1564 + 34449233-34449412,34449967-34450470                      153   2e-37
06_01_1184 - 10160902-10161093,10161231-10161354,10161470-101616...    32   0.38 
12_02_0987 - 25060266-25060461,25061124-25063351                       31   0.87 
02_02_0471 - 10714440-10714846,10714947-10715034,10715427-107155...    29   4.6  
02_04_0076 - 19486360-19488723                                         28   6.1  
02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924...    28   8.1  

>05_01_0602 + 5394341-5394520,5395083-5395586
          Length = 227

 Score =  153 bits (370), Expect = 2e-37
 Identities = 78/190 (41%), Positives = 110/190 (57%)
 Frame = +2

Query: 104 MQNNFIATNIFQKALLTCGSAVIALLDPHRGDMIACLGEVTGENAIKYMHSKMLQTEEGQ 283
           MQ   +    +Q+A +  GSA  ALLDP R D+IA LGE TG+ A   +  +M  + EG+
Sbjct: 1   MQGARVNLKGWQQAAVAFGSAFGALLDPRRADLIATLGETTGKPAFHRVLQRMRNSAEGR 60

Query: 284 DILKNKPRINSKTIAFETLSQMPENSLGRVYADFMKDNNITADSRLPVQFIADPELAYVM 463
           D+L  +PR+ S  ++      MP+N+ G  YA FM   N + D R PV+FI   ELAYV 
Sbjct: 61  DVLLERPRVISTQVSHAW--DMPQNTFGAAYAQFMGSRNFSPDDRPPVRFIDTDELAYVA 118

Query: 464 QRYREVHDLVHASLFMKTNMLGEVTVKWVEGIQTKLPMCIGGGIWGAARLRPKHRQMYLK 643
            R REVHD  H    + TN++GE  +K +E  Q  LPMC+   + G+AR   K R ++ +
Sbjct: 119 TRAREVHDFWHVLFGLPTNLIGETALKVIEFEQMFLPMCMLSVVGGSARFNEKQRTLFFQ 178

Query: 644 YYLPWAIRTG 673
           +Y PWA + G
Sbjct: 179 HYFPWASKAG 188


>04_04_1564 + 34449233-34449412,34449967-34450470
          Length = 227

 Score =  153 bits (370), Expect = 2e-37
 Identities = 77/190 (40%), Positives = 111/190 (58%)
 Frame = +2

Query: 104 MQNNFIATNIFQKALLTCGSAVIALLDPHRGDMIACLGEVTGENAIKYMHSKMLQTEEGQ 283
           MQ   +    +Q+A +  GSA  ALLDP R D+IA LGE TG+ A + +  +M  + EG+
Sbjct: 1   MQGARVNLKGWQQAAVAFGSAFGALLDPRRADLIAALGETTGKPAFQRVLQRMRNSAEGR 60

Query: 284 DILKNKPRINSKTIAFETLSQMPENSLGRVYADFMKDNNITADSRLPVQFIADPELAYVM 463
           D+L  +PR+ S  ++      MP+N+ G  YA FM   N + D R PV+F+   ELAYV 
Sbjct: 61  DVLLERPRVISTQVSHAW--DMPQNTFGAAYAQFMGSRNFSPDDRPPVRFMDTDELAYVA 118

Query: 464 QRYREVHDLVHASLFMKTNMLGEVTVKWVEGIQTKLPMCIGGGIWGAARLRPKHRQMYLK 643
            R REVHD  H    + TN++GE  +K +E  Q  LPMC+   + G+AR   K R ++ +
Sbjct: 119 TRAREVHDFWHVLFGLPTNLIGETALKVIEFEQMFLPMCMLSVVGGSARFNEKQRTLFFQ 178

Query: 644 YYLPWAIRTG 673
           +Y PWA + G
Sbjct: 179 HYFPWASKAG 188


>06_01_1184 -
           10160902-10161093,10161231-10161354,10161470-10161661,
           10162141-10162664,10162696-10162803
          Length = 379

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 143 ALLTCGSAVIALLDPHRGDMIACLGEVTGENAIKYMHSK 259
           A++TC S  +A +D   G+ +AC  E+ G +  K  H+K
Sbjct: 131 AVVTCTSTSLASMDLEVGEDVACTTEIDGPDCHKETHTK 169


>12_02_0987 - 25060266-25060461,25061124-25063351
          Length = 807

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 143 ALLTCGSAVIALLDPHRGDMIACLGEVTGENAIKYMHSK 259
           A++TC S  +A +D   G  +AC  E+ G +  K  H+K
Sbjct: 142 AVVTCTSTSLASMDLEVGKDVACTTEIDGPDCHKETHTK 180


>02_02_0471 -
           10714440-10714846,10714947-10715034,10715427-10715516,
           10715614-10715727
          Length = 232

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 427 YW*TRICSYIIILHEVGINTTKAVFRHLRQSFKCNRFGINTRF 299
           YW T++   I ++   G N  KA    L +SF  ++ GIN  F
Sbjct: 3   YWKTKVLPKIKVVFAKGGNAKKAAAAELIKSFDESKEGINGEF 45


>02_04_0076 - 19486360-19488723
          Length = 787

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/80 (28%), Positives = 37/80 (46%)
 Frame = -1

Query: 591 PPPIHIGNLVWMPSTHLTVTSPSIFVFMNKDACTKSWTSLYLCIT*ANSGSAMNCTGKRE 412
           P P  I +LV M +   ++    I     KD CT +W+++        SGS +N  G+ E
Sbjct: 415 PDPFVISSLVDMYAKCGSLEEAHILFSRTKDPCTVAWSAII-------SGSCLN--GQFE 465

Query: 411 SAVILLSFMKSA*TRPRLFS 352
            A+ L   M+    +P  F+
Sbjct: 466 RAIHLFRTMQLEHVQPNEFT 485


>02_02_0350 +
           9239138-9240218,9240755-9240906,9241392-9241457,
           9242715-9242951
          Length = 511

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 545 WVEGIQTKLPMCIGGGIWGAARL 613
           W E  QT  PMC+ G   G ARL
Sbjct: 459 WAECAQTNQPMCVFGVAQGPARL 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,515,450
Number of Sequences: 37544
Number of extensions: 364677
Number of successful extensions: 810
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)