Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31582
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   0.59 
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   1.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   1.4  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   1.8  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   2.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    25   3.1  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    24   4.2  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    23   9.6  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    23   9.6  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    23   9.6  

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 27.1 bits (57), Expect = 0.59
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 100  RNQILSDGLKKAIRSNITRCISTELAKRKVTNKLLEHAQNQTVLSTPQWTVQMRYYSSLP 279
            ++  L D   + IRS  ++     LA  +V +  LE  + + V  T QW  +M  + +  
Sbjct: 1060 KSPFLGDDEAREIRSKQSQGWGDVLADARVYHNWLEILETRGVKKTVQWCEEMHLHYTTL 1119

Query: 280  SHIKVN 297
              I+ N
Sbjct: 1120 QQIRQN 1125


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 187 VTNKLLEHAQNQTVLSTPQWTVQMRYYSSLPS 282
           V+NK L HAQ   + S P    Q + + S PS
Sbjct: 177 VSNKSLPHAQQSIIRSFPDIQKQPKGFFSYPS 208


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 127  KKAIRSNITRCISTELAKRKVTN 195
            K A+R+NI RC+ T +  +   N
Sbjct: 3460 KSAVRTNIERCVQTSIESKYYKN 3482


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 72  IDNVANNCVTESNLKRWS*ESYTVEH 149
           I+NVANN +    L  WS   Y V+H
Sbjct: 157 INNVANNSLKVKPLTLWSTLLYIVQH 182


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -3

Query: 109 FDSVTQLFAT-LSIFFTKTIPS 47
           F+S T + +T L +FFT+T PS
Sbjct: 820 FESTTLVLSTGLDVFFTRTAPS 841


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 142 SNITRCISTELAKRKVTNKLLEHAQNQTVLST 237
           S +++C    LA++++T  L   A  QTV  T
Sbjct: 461 SELSKCHEASLAEKQLTYNLAMEALEQTVRET 492


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 93  NCSQHYQYFLLKLFRPDERDGFLETVRST 7
           NC ++    LL  +R D+  GF+ T+  T
Sbjct: 385 NCLEYQARRLLTRYRNDKDSGFVHTLNGT 413


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 27  KNRPAHLDGIVLVKNIDNVANNCVTESNLKRWS*ESYTVE 146
           +N P+H++ +    +IDN +     E   K +S  S T E
Sbjct: 137 ENGPSHIENLNFFSDIDNFSKTSAEEIASKLFSSVSPTHE 176


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 137 IAFLRPSLKI*FRNTIVRNI 78
           +AFL+PSL    R+T+ R++
Sbjct: 579 LAFLKPSLMTYVRSTVARSM 598


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 216  EPDSSIYTTMDCSDEVLFESTITY 287
            E + SIY +++ +D  LFE+T  +
Sbjct: 989  EAEGSIYESLNHNDAKLFENTFEH 1012


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,277,429
Number of Sequences: 5004
Number of extensions: 23736
Number of successful extensions: 57
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)